Water is an essential resource for both rural and agricultural areas; it can be wisely distributed and used in the field to protect daily life, production, the natural environment, and the safety and stability of regional drainage and flood control systems. Our research selected a typical plains rural river network area with agriculture as the main industry to investigate the most effective method of farmland diversion and drainage. We comprehensively planned and transformed the water system flow, water conservation engineering, and the ecological environment in the irrigation area through the reutilization system. The reutilization system’s operation and scheduling design is implemented for four specific periods: the water replenishment cycle, agricultural irrigation, agricultural drainage and the rainy period of the flood season. The research period ranges from 2020 to 2023 after the completion of the system. We used monitoring, the recording of hydraulic equipment parameters and data collection to evaluate the balance of water supply and demand in the study area. At the same time, we have tracked and evaluated the four aspects of water quality enhancement, water conservation and flood control, and agricultural irrigation. The results show that the total agricultural water consumption decreased by 2.9%, and the amount of water saved increased by 9.6%. The current segment creates the rivers’ embankment standards. With a 92% irrigation guarantee rate, the current section forms and the embankment standards of the rivers satisfy the design storage volume and the flood level of one in twenty years. The water quality of all the rivers in the area has decreased by 5~10% compared to the average concentration prior to establishment. This study verifies the comprehensive effect and the suitability of the system by comparing the before and after effects, and provides a scientific basis for the method of efficient recycling and utilization of water resources in the rural plains river network area; we also propose the guidance of increasing the digital twin control and long-term operation mechanism to ensure the long-term stable operation of the technology.