Prothymosin ␣ is a small, acidic, essential nuclear protein that plays a poorly defined role in the proliferation and survival of mammalian cells. Recently, Vega et al. proposed that exogenous prothymosin ␣ can specifically increase the phosphorylation of eukaryotic elongation factor 2 (eEF-2) in extracts of NIH3T3 cells (Vega, F. V., Vidal, A., Hellman, U., Wernstedt, C., and Domínguez, F. (1998) J. Biol. Chem. 273, 10147-10152). Using similar lysates prepared by four methods (detergent lysis, Dounce homogenization, digitonin permeabilization, and sonication) and three preparations of prothymosin ␣, one of which was purified by gentle means (the native protein, and a histidine-tagged recombinant prothymosin ␣ expressed either in bacteria or in COS cells), we failed to find a response. A reconstituted system composed of eEF-2, recombinant eEF-2 kinase, calmodulin, and calcium was also unaffected by prothymosin ␣. However, unlike our optimized buffer, Vega's system included a phosphatase inhibitor, 50 mM fluoride, which when evaluated in our laboratories severely reduced phosphorylation of all species. Under these conditions, any procedure that decreases the effective fluoride concentration will relieve the inhibition and appear to activate. Our data do not support a direct relationship between the function of prothymosin ␣ and the phosphorylation of eEF-2.The detailed function of prothymosin ␣ remains cryptic and controversial. The protein is not, as its name intimates, a precursor for much smaller, processed, thymic hormones (1-5). Rather, prothymosin ␣ is exclusively mammalian (see Refs. 6 and 7, and references therein), extremely abundant (8, 9), probably unfolded (10), and highly acidic throughout its length of 109 -110 amino acids (1,11,12). It localizes to the nucleus in intact form in all tissues (13-15). An overview of the prothymosin ␣ literature strongly suggests that the protein plays an essential, but nevertheless undefined, role in the growth and survival of virtually all cells (1, 16 -19). Several laboratories have noted (i) that an increase of greater than 10-fold in the mRNA and the protein occurs when quiescent cells proliferate, (ii) that the amount of prothymosin ␣ in a tissue mirrors its inherent growth rate, and (iii) that prothymosin ␣ is expressed in a chronologically contemporaneous manner with other growth related molecules such as Myc, histone H3, and proliferating cell nuclear antigen (1, 3, 8, 20 -24). However, the most compelling evidence comes from synchronized human myeloma cells, which, when exposed to antisense oligodeoxyribonucleotides directed toward prothymosin ␣ mRNA at several locations, undergo growth arrest (25).The particulars of prothymosin ␣'s function are contested. The amino acid sequence, which should provide clues, is essentially unique. Except for a "classical" bipartite nuclear localization signal included in many otherwise unrelated nuclear proteins, the only shared featured is a reiterated region of glutamic acid residues found also in the Xenopus chromatin remo...