Over the past 30 years, Acinetobacter
baumannii has been described as an important nosocomial
pathogen due to frequent
ventilator-associated infections. Many biological processes of A. baumannii remain elusive, such as the formation
of an air–liquid biofilm (pellicle). Several studies demonstrated
the importance of post-translational modifications (PTMs) in A. baumannii physiology. Here, we investigated K-trimethylation
in A. baumannii ATCC 17978 in planktonic
and pellicle modes using proteomic analysis. To identify the most
high-confidence K-trimethylated peptides, we compared different sample
preparation methods (i.e., strong cation exchange, antibody-capture)
and processing software (i.e., different database search engines).
We identified, for the first time, 84 K-trimethylated proteins, many
of which are involved in DNA and protein synthesis (HupB, RplK), transporters
(Ata, AdeB), or lipid metabolism processes (FadB, FadD). In comparison
with previous studies, several identical lysine residues were observed
acetylated or trimethylated, indicating the presence of proteoforms
and potential PTM cross-talks. This is the first large-scale proteomic
study of trimethylation in A. baumannii and will be an important resource for the scientific community (availability
in Pride repository under accession PXD035239).