2016
DOI: 10.1016/j.bmcl.2016.07.075
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Photo-controlled binding of MutS to photo-caged DNA duplexes incorporating 4- O -(2-nitrobenzyl) or 4- O -[2-(2-nitrophenyl)propyl]thymidine

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Cited by 9 publications
(8 citation statements)
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“…72 NPOM-related, 2-nitrobenzyl or 2-(2-nitrophenyl)propyl groups have also been shown to mask the recognition of a single nucleotide bulge typically recognized by the mismatch repair protein MutS, which photo-irradiation could restore. 73 Nucleotide excision repair (NER) is unique among DNA repair mechanisms in that it repairs an extraordinarily wide range of DNA lesions caused by various environmental and endogenous agents, including intra-strand crosslinks and bulky adduct lesions. A key to its versatility lies in its initial damage sensor protein, Rad4/XPC, that can indirectly detect local thermodynamic destabilization induced by DNA damage without making direct contacts with the lesions themselves.…”
Section: Discussionmentioning
confidence: 99%
See 1 more Smart Citation
“…72 NPOM-related, 2-nitrobenzyl or 2-(2-nitrophenyl)propyl groups have also been shown to mask the recognition of a single nucleotide bulge typically recognized by the mismatch repair protein MutS, which photo-irradiation could restore. 73 Nucleotide excision repair (NER) is unique among DNA repair mechanisms in that it repairs an extraordinarily wide range of DNA lesions caused by various environmental and endogenous agents, including intra-strand crosslinks and bulky adduct lesions. A key to its versatility lies in its initial damage sensor protein, Rad4/XPC, that can indirectly detect local thermodynamic destabilization induced by DNA damage without making direct contacts with the lesions themselves.…”
Section: Discussionmentioning
confidence: 99%
“… 72 NPOM-related, 2-nitrobenzyl or 2-(2-nitrophenyl)propyl groups have also been shown to mask the recognition of a single nucleotide bulge typically recognized by the mismatch repair protein MutS, which photo-irradiation could restore. 73 …”
Section: Discussionmentioning
confidence: 99%
“…For instance, such chemistry has been used in DNA for inducing site-specific, single or double strand breaks [65][66][67] and for triggering structural transition in a base excision repair enzyme to study its mechanism 42 . NPOM-related, 2-nitrobenzyl or 2-(2nitrophenyl)propyl groups have also been shown to mask the recognition of mismatches by the mismatch binding protein MutS, which photo-irradiation could restore 68 . Here in this study, we show for the first time that a photoswitchable modification on DNA can be recognized as efficiently as a bona fide DNA lesion by a DNA damage sensor, the Rad4/XPC nucleotide excision repair complex.…”
Section: Discussionmentioning
confidence: 99%
“…NPP-dT and NPE-dT were used to block the binding of the MutS mismatch repair protein to a DNA bulge, which then could be removed by photoirradiation and enable the binding. 63 NPP, NPE, and oNB linkers were also widely used as photocleavable linkers in the backbone of oligonucleotides to control gene expression and editing. For instance, NPE has been utilized in modulating siRNA activity.…”
Section: Photochemical Modifications For Dna/ Rna Oligonucleotidesmentioning
confidence: 99%
“…NPP-dT and NPE-dT were used to block the binding of the MutS mismatch repair protein to a DNA bulge, which then could be removed by photoirradiation and enable the binding. 63 …”
Section: Photochemical Modifications For Dna/rna Oligonucleotidesmentioning
confidence: 99%