Annealing effects on 3,4,9,10-perylenetetracarboxylic dianhydride (PTCDA) films deposited on glass substrates were studied by photoacoustic (PA) spectroscopy, photoluminescence (PL) and photoluminescence excitation (PLE) measurements. PA spectra had large nonradiative peaks in a short-wavelength region, and they steeply decreased in a long-wavelength region. Differences were observed in a long-wavelength region in the PA spectra by annealing, and they depended on the annealing temperature. In PL spectra, the luminescent peak was observed at the same wavelength, but the PLE spectra changed depending on the temperature. The films were damaged by annealing, and the structural changes of film surfaces were observed. Thus, the changes of PA spectra and PLE spectra occurred related to the film morphology.