Photosystem II (PSII) is a large membrane protein complex that catalyzes oxidation of water to molecular oxygen. During its normal function, PSII is damaged and frequently turned over. The maturation of the D1 protein, a key component in PSII, is a critical step in PSII biogenesis. The precursor form of D1 (pD1) contains a C-terminal extension, which is removed by the protease CtpA to yield PSII complexes with oxygen evolution activity. To determine the temporal position of D1 processing in the PSII assembly pathway, PSII complexes containing only pD1 were isolated from a CtpAdeficient strain of the cyanobacterium Synechocystis 6803. Although membranes from the mutant cell had nearly 50% manganese, no manganese was detected in isolated ⌬ctpAHT3 PSII, indicating a severely decreased manganese affinity. However, chlorophyll fluorescence decay kinetics after a single saturating flash suggested that the donor Y Z was accessible to exogenous Mn 2؉ ions. Furthermore, the extrinsic proteins PsbO, PsbU, and PsbV were not present in PSII isolated from this mutant. However, PsbO and PsbV were present in mutant membranes, but the amount of PsbV protein was consistently less in the mutant membranes compared with the control membranes. We conclude that D1 processing precedes manganese binding and assembly of the extrinsic proteins into PSII. Interestingly, the Psb27 protein was found to be more abundant in ⌬ctpAHT3 PSII than in HT3 PSII, suggesting a possible role of Psb27 as an assembly factor during PSII biogenesis.Photosystem II (PSII), 1 a multisubunit protein complex localized to the thylakoid membranes of cyanobacteria and chloroplasts, performs a light-driven electron transfer from water to plastoquinones, generating molecular oxygen as a byproduct (1). Cyanobacterial PSII consists of more than 20 subunits including both membrane-integral and extrinsically associated proteins (2, 3). In addition to its protein components, PSII also has many associated cofactors including chlorophylls, pheophytins, plastoquinones, manganese, non-heme iron, calcium, and chloride atoms as well as two heme groups (2, 3). Recent structural studies (4 -6) have greatly advanced our knowledge of the arrangement of the components within the functional complex. In particular, new details on the structure of the tetra-manganese-calcium cluster of the oxygen-evolving complex have given key insights into the mechanism of the water oxidation reaction (6).Despite these advances, these static structures are not adequate to understand the dynamic nature of the assembly and turn-over of the PSII complex. The structural complexity of PSII requires precise and regulated assembly, yet the PSII biogenesis pathway is poorly understood and many questions still remain as to how the components are assembled into a functional PSII complex. Furthermore, PSII assembly occurs frequently, because the PSII complex is rapidly turned over even under normal conditions (7). As a consequence of the electron transfer reactions, the D1 protein is irreversibly damaged, remo...