Organic rigid ligand-modified polyoxometalate-based materials possess complex and diverse structures, promising electrochemical energy storage properties and outstanding photocatalytic capabilities. Hence, two new [BW 12 O 40 ] 5− (abbreviated as {BW 12 O 40 })-based inorganic-organic hybrids [{Cu(en) 2 (H 2 O)}][{Cu(pdc)(en)}{Cu(en) 2 }(BW 12 O 40 )]•2H 2 O (1) and [{Cu I 5 (pz) 6 (H 2 O) 4 }(BW 12 O 40 )](2) (pdc = 2-picolinate, en = ethylenediamine, pz = pyrazine) were successfully synthesized through a hydrothermal method. Among them, pdc and pz were obtained by in situ transformation from 2,6-pyridinedicarboxylic acid (H 2 pydc) and 2,3-pyrazinedicarboxylic acid (H 2 pzdc), respectively. In compound 1, the {BW 12 O 40 } clusters as an intermediate junction connect with {Cu(pdc)(en)}{Cu(en) 2 } and {Cu(en) 2 (H 2 O)} to form monomers, which in turn form supramolecular chains, sheets, and space network via hydrogen bonding. The {BW 12 O 40 } clusters are packed into copper-pyrazine frameworks in compound 2, and a unique polyoxometalate-based metal organic frameworks (POMOFs) structure with a new topology of {12} 2 {6.12 3 .14 2 } 2 {6 2 .12.14 2 .18}{6 2 .12 3 .16}{6} 6 is formed via covalent bonds. When used as electrode materials for supercapacitors, the values of specific capacitance are 651.56 F g −1 for 1-GCE and 584.43 F g −1 for 2-GCE at a current density of 2.16 A g −1 and good cycling stability (90.94%, 94.81% of the initial capacity after 5000 cycles at 15.12 A g −1 , respectively). The kinetic analysis reveals that surface capacitance plays a major role. Furthermore, both compounds can effectively degrade Rhodamine B (RhB) and Methylene blue (MB), showing the outstanding photocatalytic performance.