Photobiological H 2 production is an attractive option for renewable solar fuels. Sulfur-deprived cells of Chlamydomonas reinhardtii have been shown to produce hydrogen with the highest efficiency among photobiological systems. We have investigated the photosynthetic reactions during sulfur deprivation and H 2 production in the wild-type and state transition mutant 6 (Stm6) mutant of Chlamydomonas reinhardtii. The incubation period (130 h) was dissected into different phases, and changes in the amount and functional status of photosystem II (PSII) were investigated in vivo by electron paramagnetic resonance spectroscopy and variable fluorescence measurements. In the wild type it was found that the amount of PSII is decreased to 25% of the original level; the electron transport from PSII was completely blocked during the anaerobic phase preceding H 2 formation. This block was released during the H 2 production phase, indicating that the hydrogenase withdraws electrons from the plastoquinone pool. This partly removes the block in PSII electron transport, thereby permitting electron flow from water oxidation to hydrogenase. In the Stm6 mutant, which has higher respiration and H 2 evolution than the wild type, PSII was analogously but much less affected. The addition of the PSII inhibitor 3-(3,4-dichlorophenyl)-1,1-dimethylurea revealed that ∼80% of the H 2 production was inhibited in both strains. We conclude that (i) at least in the earlier stages, most of the electrons delivered to the hydrogenase originate from water oxidation by PSII, (ii) a faster onset of anaerobiosis preserves PSII from irreversible photoinhibition, and (iii) mutants with enhanced respiratory activity should be considered for better photobiological H 2 production. S olar fuels are an attractive concept for development of future renewable energy systems. Among other fuels, H 2 is considered to be one of the most effective and clean fuels (1-3). Solardriven H 2 production by photosynthetic microorganisms (photobio-H 2 production) is a viable alternative that complements the proposed chemical technologies. Green algae and cyanobacteria can, using water as an electron source via photosynthesis, produce H 2 with specific H 2 -evolving enzymes (hydrogenases) coupled to the photosynthetic machinery (4-6).Although green algae possess a very active hydrogenase enzyme compared with other organisms (the turnover rate of the algal FeFe hydrogenase is in thousands per second, 100-fold higher than that of other hydrogenases), direct light-to-H 2 conversion efficiency is very low (7,8). Thus, this is not a main metabolic process. Moreover, H 2 formation requires anaerobic conditions in the cell because the hydrogenase activity is sensitive to the presence of O 2 . The consequence is that oxygenic photosynthesis cannot easily be directly coupled to H 2 evolution in green algae.Melis and coworkers reported a two-stage process based on sulfur (S) deprivation in Chlamydomonas reinhardtii, which allowed the separation of the photosynthetic reactions from H 2 fo...