The current computational study analyzes the oxidation
reactions
of the superoxide and hydroxyl radicals with cysteine residues due
to their importance as natural targets to neutralize the harmful reactive
oxygen species. Due to the high reactivity of the hydroxyl radicals
with the surrounding environment, we also studied the oxidation reactions
of organic radicals with cysteine. In addition, we explored the different
reaction pathways between cysteine and the superoxide radicals in
both anionic and protonated forms. All calculations were performed
at the integrated quantum mechanical/molecular mechanical level in
an explicit water box under periodic boundary conditions. Higher energy
barriers were observed for the organic radicals than the hydroxyl
radical, where the chemical nature of the organic radical and the
branching pattern are the main factors contributing to the Gibbs energy
barriers. The superoxide radical oxidation pathway exhibits a more
complex nature due to the complicated interplay of various factors
such as the underlying reaction mechanism, the involved oxidizing
agent, the kinetic accessibility of the oxidation reaction, and the
thermodynamics favorability of those oxidation reactions. We also
examined the effect of the solvent-assisted hydrogen atom transfer
on the different reaction barriers, which was found to be kinetically
unfavorable.