Understanding the dynamics of endemic tree component species based on natural regeneration (NR) and adult trees (AT) is essential for formulating conservation strategies for protecting these species. The objective of the present study was to identify endemic species in a preserved area of secondary forest in the Atlantic Forest domain in Brazil and to evaluate their dynamics over 24 years. Based on inventories carried out from 1992 to 2016 of the NR (diameter at breast height - dbh ≤ 5 cm) and of the AT (dbh ≥ 5 cm) in ten sites with different characteristics (physiographic, edaphic, and successional), it was possible to, initially, identify 58 species classified as endemic to Brazil (EBR) and/or those exclusive to the Brazilian Atlantic Forest (EAF), among the 226 species in the entire survey. Subsequently, this classification was reassessed based on updated information on its occurrence, and only 38 of these species were maintained as endemic to Brazil and/or to the Atlantic Forest. Some species were recorded in the AT and NR strata, in different sites, throughout the study period, while others occurred in only one level (AT or NR), some with low abundance. Among these endemic species, eight are included in the endangered species lists, and 15 can be classified as rare, as there was only one individual in the survey. Considering the two arboreal strata it was observed that some species were abundant in the forest in all inventories and several sites, while others went throughout the study period with few individuals and, in some cases, disappeared due to mortality. These results contribute to understanding the factors that can affect the local abundance of endemic species over time, allowing the definition of conservation actions for protecting these vulnerable species, thus avoiding their extinction.