Energy-dependent exciton quenching, or qE, protects the higher plant photosynthetic apparatus from photodamage. Initiation of q E involves protonation of violaxanthin deepoxidase and PsbS, a component of the photosystem II antenna complex, as a result of lumen acidification driven by photosynthetic electron transfer. It has become clear that the response of q E to linear electron flow, termed ''q E sensitivity,'' must be modulated in response to fluctuating environmental conditions. Previously, three mechanisms have been proposed to account for q E modulation: (i) the sensitivity of q E to the lumen pH is altered; (ii) elevated cyclic electron flow around photosystem I increases proton translocation into the lumen; and (iii) lowering the conductivity of the thylakoid ATP synthase to protons (g H؉) allows formation of a larger steady-state proton motive force (pmf). Kinetic analysis of the electrochromic shift of intrinsic thylakoid pigments, a linear indicator of transthylakoid electric field component, suggests that, when CO 2 alone was lowered from 350 ppm to 50 ppm CO 2, modulation of qE sensitivity could be explained solely by changes in conductivity. Lowering both CO 2 (to 50 ppm) and O2 (to 1%) resulted in an additional increase in q E sensitivity that could not be explained by changes in conductivity or cyclic electron flow associated with photosystem I. Evidence is presented for a fourth mechanism, in which changes in q E sensitivity result from variable partitioning of proton motive force into the electric field and pH gradient components. The implications of this mechanism for the storage of proton motive force and the regulation of the light reactions are discussed. P lant chloroplasts convert light energy into two forms usable by the biochemical processes of the plant (1, 2). Redox free energy is stored by linear electron flow (LEF) through photosystem (PS) II, the cytochrome b 6 f complex, PS I, ferredoxin, and finally NADPH. Translocation of protons from the stroma to the lumen is coupled to LEF, resulting in the establishment of transthylakoid proton motive force (pmf ), which drives the synthesis of ATP from ADP and P i at the thylakoid CF o -CF 1 ATP synthase (3). It has become clear that certain redox carriers and the pmf also play regulatory roles in photosynthesis. The redox status of the electron transfer chain regulates a range of processes by means of the thioredoxin system (4) and the plastoquinone pool (5). Meanwhile, the pH component (⌬pH) of pmf regulates the efficiency of light capture by means of protonation of thylakoid lumen proteins (6). The balancing of these two roles governs the development and efficiency of the photochemical machinery, as well as the avoidance of harmful side reactions.The Need for Down-Regulation of the Photosynthetic Apparatus Plants are exposed to widely varying environmental conditions, often resulting in light energy capture that exceeds the capacity of the photosynthetic apparatus (7-10), which in turn can lead to photodamage (11,12). Plants have evolved...