2023
DOI: 10.21203/rs.3.rs-2408681/v2
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PhyloBench: a Benchmark for Evaluating Phylogenetic Programs

Sergey Spirin,
Andrey Sigorskikh,
Aleksei Efremov
et al.

Abstract: Motivation. Phylogenetic inference based on protein sequence alignment is a widely used procedure. Numerous phylogenetic algorithms have been developed, most of which have many parameters and options. Choosing a program, options, and parameters can be a nontrivial task. No benchmark for comparison of phylogenetic programs on real protein sequences is publicly available. Results. We have developed PhyloBench, a benchmark for evaluating the quality of phylogenetic inference, and used it to test a number of popul… Show more

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