Phylogenetic position of Daphne genkwa (Thymelaeaceae) inferred from complete chloroplast data

YOO, Su-Chang; Oh, Sang‐Hun; Park, Jongsun

doi:10.11110/kjpt.2021.51.2.171

Cited by 13 publications

(8 citation statements)

References 20 publications

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“…Our results, consistent with previous analyses (Yoo et al. 2021 ; Lee SY et al. 2022 ), indicate that further detailed systematic studies of Daphne and its closely related groups with more taxon sampling are needed.…”

Section: Discussionsupporting

confidence: 92%

“…Geneious Prime ® v2020.2.4 (Biomatters Ltd., Auckland, New Zealand) was used for annotation based on the Daphne genkwa chloroplast (MT754180) (Yoo et al. 2021 ) and read coverage depth map ( Supplementary Figure 1 ). A circular map of the chloroplast genome ( Figure 2 ) and a schematic map of the cis- and trans-splicing genes ( Supplementary Figures 2 and 3 ) were generated by CPGView (Liu et al.…”

Section: Methodsmentioning

confidence: 99%

“… 2022 ), MT754180 (Yoo et al. 2021 ), MT790358 (Liang et al. 2020 ), MW246157 (unpublished), MW246160 (unpublished), MW393701 (unpublished), MW393702 (unpublished), NC_035896 (Cho et al.…”

Section: Methodsmentioning

confidence: 99%

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Complete chloroplast genome of Daphne pseudomezereum var. koreana (Thymelaeaceae)

YOO

Park

2023

Mitochondrial DNA Part B

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Daphne pseudomezereum A. Gray var. koreana (Nakai) Hamaya is a shrub distributed in high mountains in Japan and Korea and is used as a medicinal plant. The complete chloroplast genome of D. pseudomezereum var. koreana is 171,152 bp long with four subregions consisting of a large single-copy region (84,963 bp), a small single-copy region (41,725 bp), and a pair of inverted repeats (2739 bp). The genome includes 139 genes (93 protein-coding genes, eight rRNAs, and 38 tRNAs). Phylogenetic analyses show that D. pseudomezereum var. koreana is nested within the Daphne clade in the narrow sense and that it forms a distinct lineage.

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Section: Discussionsupporting

confidence: 92%

Section: Methodsmentioning

confidence: 99%

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Complete chloroplast genome of Daphne pseudomezereum var. koreana (Thymelaeaceae)

YOO

Park

2023

Mitochondrial DNA Part B

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“…Interspecific variations between A. aethusifolius and A. dioicus var. kamtschaticus were investigated with the same method used in the previous studies (Kim et al, 2021;Yoo et al, 2021). In total, there were 206 single nucleotide polymorphisms and 62 regions of insertion/ deletion (INDEL regions, 907 bp in total).…”

Section: Resultsmentioning

confidence: 99%

The complete chloroplast genome of Aruncus aethusifolius (Rosaceae), a species endemic to Korea

Park¹,

Suh

2022

Korean J. Pl. Taxon

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Aruncus aethusifolius (H. Lév.) Nakai is an endemic species in Korea and is economically important as an ornamental herb. The complete chloroplast genome of A. aethusifolius is 157,217 bp long with four subregions consisting of 85,207 bp of large singlecopy and 19,222 bp of small single-copy regions separated by 26,394 bp of inverted repeat regions. The genome includes 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). Phylogenetic analyses demonstrates that the chloroplast genome of A. aethusifolius was sister to A. dioicus var. kamtschaticus, forming the strongly supported clade of Aruncus. This is the first report of the chloroplast genome of A. aethusifolius.

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“…The INDEL region was defined as continuous INDELs, as in previous studies. All of these analyses were conducted in the GeIS environment, as used in previous studies (Park et al, 2020d;Park et al, 2021c;Yoo et al, 2021;Park and Xi, 2022).…”

Section: Methodsmentioning

confidence: 99%

The complete chloroplast genome of Erigeron canadensis isolated in Korea (Asteraceae): Insight into the genetic diversity of the invasive species

Park

2023

Korean J. Pl. Taxon

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We have determined the complete chloroplast genome of Erigeron canadensis isolated in Korea. The circular chloroplast genome of E. canadensis is 152,767 bp long and has four subregions: 84,317 bp of large single-copy and 18,446 bp of small single-copy regions are separated by 25,004 bp of inverted repeat regions including 133 genes (88 protein-coding genes, eight rRNAs, and 37 tRNAs). The chloroplast genome isolated in Korea differs from the Chinese isolate by 103 single-nucleotide polymorphisms (SNPs) and 47 insertions and deletion (INDEL) regions, suggesting different invasion sources of E. canadensis in Korea and China. A nucleotide diversity analysis revealed that the trend of the nucleotide diversity of E. canadensis followed that of 11 Erigeron chloroplasts, except for three peaks. The phylogenetic tree showed that our E. canadensis chloroplast is clustered with E. canadensis reported from China. Erigeron canadensis can be a good target when attempting to understand genetic diversity of invasive species.

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Phylogenetic position of Daphne genkwa (Thymelaeaceae) inferred from complete chloroplast data

Cited by 13 publications

References 20 publications

Complete chloroplast genome of Daphne pseudomezereum var. koreana (Thymelaeaceae)

Complete chloroplast genome of Daphne pseudomezereum var. koreana (Thymelaeaceae)

The complete chloroplast genome of Aruncus aethusifolius (Rosaceae), a species endemic to Korea

The complete chloroplast genome of <I>Erigeron canadensis</I> isolated in Korea (Asteraceae): Insight into the genetic diversity of the invasive species

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