Abstract:The current taxonomic status of the species and subspecies belonging to the genus Alouatta is addressed by combined phylogenetic analysis using morphological, kariotipyc and molecular data (mitochondrial genes cytocrome oxidase II and cytochrome B). Our result demonstrated that Alouatta palliata is the most basal taxon for the genus in concordance with previous studies, as well as showing the validity of the taxon Alouatta sara as a species. Also our analysis shows that the sex chromosome has evolved from a XY/XX system to a X1X2Y1Y2/X1X1X2X2 system within the genus, as well as an increase in the size and complexity of the hioideal bone. Rev. Biol The evolutionary relationships of the infraorder Platyrrhini (Primates) genera have been studied using morphological (Rosenberg 1981, 1984, Ford 1986, Zingeser 1973, Ford and Davis 1992, karyotypic and molecular data (Schneider et al. 1993, Horovitz et al. 1998, Dutrillaux et al. 1986). Some incongruence between morphological and molecular data has emerged in some groups, such as the subfamily Atelinae (Lagothrix É. Geoffroy 1812, Brachyteles Spix 1823, Ateles É. Geoffroy 1806, and Alouatta Lacépède 1799). The clade Atelinae is considered to be a monophyletic group based on the large body size, a prehensile tail with a hairless ventral area for grasping, the frequent use of suspensory positional behaviors, and other characters (Horowitz et al. 1998, Rosenberg 1989.The phylogenetic relationships among the Atelinae genera have not been explored until recently (Horovitz et al. 1998). According to Rosenberg (1981Rosenberg ( , 1984, Ford (1986), Zingeser (1973 and Ford and Davis (1992), reported that the genus Alouatta is the sister clade to a clade compose of Lagothrix, Brachyteles and Ateles based on morphological data (Brachyteles and Ateles are the sister clade of Lagothrix). In contrast, Kay (1990) found the clade Lagothrix + Ateles as the sister clade of Alouatta + Brachyteles based on craneo-dental characters. Dutrillaux et al. (1986) inferring chromosome rearrangements, reported that Brachyteles, Lagothrix and Ateles form a separate and distinct evolutionary branch from which Lagothrix is more closely related to Ateles than Brachyteles. On the other hand, Schneider et al. (1993Schneider et al. ( , 1996, using DNA sequences for the α-globin and IRBP intron-1, found that Alouatta is the sister taxon to the clade ((Brachyteles+Lagothrix) Ateles). These relationships were tested by Horovitz et al.