Phylogenetic relationships of activated sludge isolates of ammonia oxidizers with different sensitivities to ammonium sulfate.

Suwa, Yuichi; Sumino, Tatsuo; Noto, Kazuhiko

doi:10.2323/jgam.43.373

Cited by 88 publications

(62 citation statements)

References 38 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Low ammonium concentration in the media might have inhibited their growths and consequently the performances, Similar to results were also reported by earlier workers (Stehr et al, 1995;Suwa et al, 1997;Magalhaes et al, 2005). Since the members of AOB communities are significantly different from one another (Bernhard et al, 2005), it is also possible that some AOBs were more sensitive to low ammonium concentration as observed by Hopkinson et al,(1999).…”

Section: Influence Of Nh 4 + Concentration On Consortium Of Aob-12 Ansupporting

confidence: 81%

Effect of Ammonia Concentration on the Nitrification Potential of Ammonia Oxidizing Bacterial Isolates from Fish Processing Waste Effluents

Reddy¹,

Subrahmanyam²,

Dechamma³

et al. 2017

Int.J.Curr.Microbiol.App.Sci

View full text Add to dashboard Cite

Section: Influence Of Nh 4 + Concentration On Consortium Of Aob-12 Ansupporting

confidence: 81%

Effect of Ammonia Concentration on the Nitrification Potential of Ammonia Oxidizing Bacterial Isolates from Fish Processing Waste Effluents

Reddy¹,

Subrahmanyam²,

Dechamma³

et al. 2017

Int.J.Curr.Microbiol.App.Sci

View full text Add to dashboard Cite

“…Nitrosomonas europaea) were well separated from our clones in the tree, our clones clustered with other cloned sequences obtained by others from freshwater-lake and sediment environments (Speksnijder et al 1998). Some of the Elkhorn Slough clones also clustered with sequences derived from sand dunes (Kowalchuk et al 1997) and activated sludge (Suwa et al 1997). Thus, even within the cluster related to N. marina, considerable diversity is present among the Elkhorn Slough AOB assemblage.…”

Section: Diversity Of Ammonia-oxidizing Bacteriamentioning

confidence: 57%

Biogeochemical processes in a small California estuary. 2. Nitrification activity, community structure and role in nitrogen budgets

Caffrey

Harrington²,

Solem³

et al. 2003

Mar. Ecol. Prog. Ser.

View full text Add to dashboard Cite

“…For each lineage, the minimum 16S rRNA sequence similarity between two of its members is depicted. Sequences included in the analysis were published by Aakra et al (1999a, b), Head et al (1993), Juretschko et al (1998), Purkhold et al (2000), Sorokin et al (1998), Suwa et al (1997) and Yamagata et al (1999). Sequences of strains CNS326, G1, K1, IWT202, TK794, WH-2, Koll-21, DYS317, DYS323, IWT514, TNO632, marine bacteria C-45, NH4W, 122, URW, NO3W, C-113, TT140-098-2, TT140-98A and estuarine bacteria TA 921-i-NH4, B19-i-NH4, C-17 are unpublished but are available at GenBank.…”

Section: Results and Discussion Aob Phylogeny Inferred From 16s Rrnamentioning

confidence: 99%

“…Filled and empty circles indicate parsimony bootstrap values (100 resamplings) above 90 and 70 %, respectively. Sequences included in the analysis were published by Aakra et al (2001a), Casciotti & Ward (2001), Holmes et al (1995), McTavish et al (1993), Norton et al (2002), Purkhold et al (2000), Rotthauwe et al (1995), Sorokin et al (2001), Suwa et al (1997) and Yamagata et al (1999). Sequences of Nitrosospira sp.…”

Section: Inconsistencies Between Determined Sequences and Published Dmentioning

confidence: 99%

16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads

Purkhold

Wagner

Timmermann

et al. 2003

International Journal of Systematic and Evolutionary Microbiology

264

192

View full text Add to dashboard Cite

The phylogenetic relationship of 12 ammonia-oxidizing isolates (eight nitrosospiras and four nitrosomonads), for which no gene sequence information was available previously, was investigated based on their genes encoding 16S rRNA and the active site subunit of ammonia monooxygenase (AmoA). Almost full-length 16S rRNA gene sequences were determined for the 12 isolates. In addition, 16S rRNA gene sequences of 15 ammonia-oxidizing bacteria (AOB) published previously were completed to allow for a more reliable phylogeny inference of members of this guild. Moreover, sequences of 453 bp fragments of the amoA gene were determined from 15 AOB, including the 12 isolates, and completed for 10 additional AOB. 16S rRNA gene and amoA-based analyses, including all available sequences of AOB pure cultures, were performed to determine the position of the newly retrieved sequences within the established phylogenetic framework. The resulting 16S rRNA gene and amoA tree topologies were similar but not identical and demonstrated a superior resolution of 16S rRNA versus amoA analysis. While 11 of the 12 isolates could be assigned to different phylogenetic groups recognized within the betaproteobacterial AOB, the estuarine isolate Nitrosomonas sp. Nm143 formed a separate lineage together with three other marine isolates whose 16S rRNA sequences have not been published but have been deposited in public databases. In addition, 17 environmentally retrieved 16S rRNA gene sequences not assigned previously and all originating exclusively from marine or estuarine sites clearly belong to this lineage. INTRODUCTIONChemolithoautotrophic ammonia-oxidizing bacteria (AOB) are capable of gaining energy via conversion of ammonia to nitrite and are thus of considerable importance in the global nitrogen cycle. Almost all aerobic environments in which organic matter is mineralized are possible habitats for AOB (Bock & Wagner, 2001). They have been detected in a variety of soil, marine, estuarine and freshwater systems and are crucial for the removal of nitrogen compounds in wastewater treatment plants (Painter, 1986), thus contributing to the impairment of anthropogenic damage to the environment. On the other hand, AOB activity causes deterioration of natural building stones (Bock & Sand, 1993) and enhances nitrogen fertilizer loss from arable soil (MacDonald, 1986). Due to their importance in natural and engineered systems, significant efforts have been made to characterize the diversity, distribution patterns and ecophysiology of AOB (for reviews see Koops & Pommerening-Röser, 2001; Koops et al., 2003).The first isolation of AOB was reported in 1890 (Frankland & Frankland, 1890;Winogradsky, 1890) and since then a considerable number of AOB isolates was obtained from various environments, leading to the description of 16 AOB species (reviewed by Koops et al., 2003). Comparative 16S rRNA gene sequence analyses of these species showed that 'Nitrosococcus halophilus' and Nitrosococcus oceani belong to the class 'Gammaproteobacteria', while the remaining...

show abstract

Phylogenetic relationships of activated sludge isolates of ammonia oxidizers with different sensitivities to ammonium sulfate.

Cited by 88 publications

References 38 publications

Effect of Ammonia Concentration on the Nitrification Potential of Ammonia Oxidizing Bacterial Isolates from Fish Processing Waste Effluents

Effect of Ammonia Concentration on the Nitrification Potential of Ammonia Oxidizing Bacterial Isolates from Fish Processing Waste Effluents

Biogeochemical processes in a small California estuary. 2. Nitrification activity, community structure and role in nitrogen budgets

16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads

Contact Info

Product

Resources

About