Potential of ultrasonic vocalizations (USVs) to reflect a degree of discomfort of a caller is mostly investigated in laboratory rats and mice but poorly known in other rodents. We examined 36 (19 male, 17 female) adult yellow steppe lemmings Eolagurus luteus for presence of USVs during 8-min experimental trials including 2-min test stages of increasing discomfort: isolation, touch, handling and body measure. We found that 33 of 36 individuals vocalized at isolation stage, i.e., without any human impact. For 14 (6 male and 8 female) individuals, a repeated measures approach revealed that increasing discomfort from isolation to handling stages resulted in increase of call power quartiles and fundamental frequency, whereas call rate remained unchanged. We discuss that, in adult yellow steppe lemmings, the discomfort-related changes of USV fundamental frequency and power variables follow the same common rule as the audible calls of most mammals, whereas call rate shows a different trend. These data contribute to research focused on searching the universal acoustic cues to discomfort in mammalian USVs.