Infection outcomes can be strongly context-dependent, shifting a host-symbiont relationship along a parasitism-mutualism continuum. Numerous studies show that under stressful conditions, symbionts that are typically mutualistic can become parasitic. The reverse possibility – a parasite becoming mutualistic – has received much less study. We investigated whether the parasitic microsporidiumOrdospora pajuniican become beneficial for its hostDaphnia dentiferain the presence of the more virulent fungal pathogenMetschnikowia bicuspidata. We found that, even though infection withO. pajuniireduces the frequency of penetration ofM. bicuspidataspores into the host body cavity, it does not improve the survival or reproduction of the host; conversely, coinfection increased the mortality ofDaphnia. However, the shorter lifespan of coinfected hosts disrupted the life cycle ofM. bicuspidata, greatly reducing its fitness. Thus, coinfection with both pathogens was detrimental to the host at the individual level, but might be beneficial for the host population as a result of greatly reduced production ofM. bicuspidataspores. If so, this would mean thatO. pajuniioutbreaks should delay or preventM. bicuspidataoutbreaks. In support of this, in an analysis of dynamics of naturally occurring outbreaks in two lakes where these pathogens co-occur, we found a time lag in occurrence betweenO. pajuniiandM. bicuspidata, withM. bicuspidataepidemics only occurring after the collapse ofO. pajuniiepidemics. Thus, these results suggest that the interaction between co-occurring symbionts – and the net impact of a symbiont on a host – might be qualitatively different at different scales. Importance: Understanding the factors that modify infection probability and virulence is crucial for identifying the drivers of infection outbreaks and modeling disease epidemic progression, and increases our ability to control diseases and reduce the harm they cause. One factor that can strongly influence infection probability and virulence is the presence of other pathogens. However, while coexposures and coinfections are incredibly common, we still have only a limited understanding of how pathogen interactions alter infection outcomes, or whether their impacts are scale-dependent. We used a system of one host and two pathogens to show that sequential coinfection can have a tremendous impact on the host and on the infecting pathogens, and that the outcome of (co-)infection can be negative or positive depending on the focal organization level.