Phylogeny of Spiraea (Rosaceae) based on plastid and nuclear molecular data: Implications for morphological character evolution and systematics

Yu, Sheng‐Xiang; Gadagkar, Sudhindra R.; Potter, Daniel; Xu, Dong; Zhang, Mei; Li, Zhenyu

doi:10.1016/j.ppees.2018.08.003

Cited by 12 publications

(20 citation statements)

References 18 publications

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“…The trnL-UAA was provided with the smallest intron (514 bp), whereas the intron of trnK-UUU possesses the largest intron (2497 bp), the matK gene is contained in it. Meanwhile, the matK gene is widely used as a molecular marker to research the phylogenetic relationships in other angiosperms [ 39 , 40 , 41 , 42 , 43 ]. Additionally, in previous studies, the matK region of Malus cp genome had been analyzed to contribute to the identification of potential germplasm donors for the cultivated Malus species [ 22 ].…”

Section: Resultsmentioning

confidence: 99%

Complete Chloroplast Genome Sequence of Malus hupehensis: Genome Structure, Comparative Analysis, and Phylogenetic Relationships

Zhang

Rong

et al. 2018

Molecules

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Malus hupehensis belongs to the Malus genus (Rosaceae) and is an indigenous wild crabapple of China. This species has received more and more attention, due to its important medicinal, and excellent ornamental and economical, values. In this study, the whole chloroplast (cp) genome of Malus hupehensis, using a Hiseq X Ten sequencing platform, is reported. The M. hupehensis cp genome is 160,065 bp in size, containing a large single copy region (LSC) of 88,166 bp and a small single copy region (SSC) of 19,193 bp, separated by a pair of inverted repeats (IRs) of 26,353 bp. It contains 112 genes, including 78 protein-coding genes (PCGs), 30 transfer RNA genes (tRNAs), and four ribosomal RNA genes (rRNAs). The overall nucleotide composition is 36.6% CG. A total of 96 simple sequence repeats (SSRs) were identified, most of them were found to be mononucleotide repeats composed of A/T. In addition, a total of 49 long repeats were identified, including 24 forward repeats, 21 palindromic repeats, and four reverse repeats. Comparisons of the IR boundaries of nine Malus complete chloroplast genomes presented slight variations at IR/SC boundaries regions. A phylogenetic analysis, based on 26 chloroplast genomes using the maximum likelihood (ML) method, indicates that M. hupehensis clustered closer ties with M. baccata, M. micromalus, and M. prunifolia than with M. tschonoskii. The availability of the complete chloroplast genome using genomics methods is reported here and provides reliable genetic information for future exploration on the taxonomy and phylogenetic evolution of the Malus and related species.

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Section: Resultsmentioning

confidence: 99%

Complete Chloroplast Genome Sequence of Malus hupehensis: Genome Structure, Comparative Analysis, and Phylogenetic Relationships

Zhang

Rong

et al. 2018

Molecules

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“…This taxonomically complex genus belongs to the subfamily Amygdaloideae (formerly Spiraeoideae), tribe Spiraeeae, and contains, according to various estimates, 80 to 120 taxa [ 1 , 6 ]. Phylogenetic relationships within the genus have not been studied sufficiently, and evolutionary patterns for morphological characteristics remain unclear [ 7 ]. Due to high polymorphism, spirea has been subdivided by various authors into subgenera, sections, and series [ 8 , 9 , 10 ].…”

Section: Introductionmentioning

confidence: 99%

Phytoconstituents and Bioactivity of Plants of the Genus Spiraea L. (Rosaceae): A Review

Kostikova

Петрова

2021

IJMS

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The genus Spiraea L. belongs to the Rosaceae Juss. family and includes more than 100 species distributed in the temperate zone and subtropical zone of the Northern Hemisphere at the center of species diversity in East Asia. Representatives of the genus are known as ornamental plants with many forms and varieties, are widely used in conventional medicine, and have a high resource potential. This review provides information on the diversity of phenolic compounds (flavonoids, phenolcarboxylic acids, and lignans), terpenoids, alkaloids, steroids, and other classes of secondary metabolites in the species of Spiraea worldwide. The article also presents little-known and hard-to-find data published in Russian concerning Spiraea phytochemistry. The biological activities of extracts and their fractions and of individual compounds having different types of biological activity (e.g., antioxidant, antibacterial, anti-inflammatory, and antifungal) are discussed. Data about biotechnological research on representatives of the genus Spiraea are presented too. The analysis of the literature showed that further chemical and pharmacological studies on Spiraea plants are quite promising.

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“…It has beautiful flowers and delicate leaves, so it is a common ornamental shrub in garden and has important horticultural and economic value (Yu et al. 2018 ). The leaves and fruits of S. trilobata have the functions of promoting blood circulation, removing blood stasis, detumescence and relieving pain (Olennikov and Chirikova 2018 ).…”

mentioning

confidence: 99%

Characterization of the complete plastome of Spiraea trilobata (Rosaceae), a perennial shrub

Qin

Zhu

Zhang

et al. 2022

Mitochondrial DNA Part B

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The complete plastome of Spiraea trilobata , a shrub, is determined. The plastome is 155,981 bp in length and comprises a large single-copy region (84,417 bp), a small single-copy region (18,878 bp), and a pair of inverted repeats regions (26,343 bp). A total of 113 unique genes are annotated for the plastome of S. trilobata , containing 79 protein coding genes (PCGs), 30 tRNAs, and four rRNAs. The GC content of this plastome is 36.8%. Phylogenomic analysis based on 17 plastomes reveals that S. trilobata is sister to Spiraea blumei . Compared with S. blumei , S. trilobata lacks both trnM-CAU and ycf1 . In addition, the GC content of both species is the same.

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Phylogeny of Spiraea (Rosaceae) based on plastid and nuclear molecular data: Implications for morphological character evolution and systematics

Cited by 12 publications

References 18 publications

Complete Chloroplast Genome Sequence of Malus hupehensis: Genome Structure, Comparative Analysis, and Phylogenetic Relationships

Complete Chloroplast Genome Sequence of Malus hupehensis: Genome Structure, Comparative Analysis, and Phylogenetic Relationships

Phytoconstituents and Bioactivity of Plants of the Genus Spiraea L. (Rosaceae): A Review

Characterization of the complete plastome of Spiraea trilobata (Rosaceae), a perennial shrub

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