Using a confocal fluorescence microscope with an avalanche photodiode as detector, we studied the fluorescence of the tetramethylrhodamine labeled F I part of the H + -ATPase from Escherichia coli, EF I , carrying the Q QT106-C mutation [Aggeler, J.A. and Capaldi, R.A. (1992) J. Biol. Chem. 267, 21355^21359] in aqueous solution upon excitation with a modelocked argon ion laser at 528 nm. The diffusion of the labeled EF I through the confocal volume gives rise to photon bursts, which were analyzed with fluorescence correlation spectroscopy, resulting in a diffusion coefficient of 3.3U10^U cm P s^I. In the presence of nucleotides the diffusion coefficient increases by about 15%. This effect indicates a change of the shape and/or the volume of the enzyme upon binding of nucleotides, i.e. fluorescence correlation spectroscopy with single EF I molecules allows the detection of conformational changes.z 1998 Federation of European Biochemical Societies.