The S-phase DNA damage checkpoint slows the rate of DNA synthesis in response to damage during replication. In the fission yeast Schizosaccharomyces pombe, Cds1, the S-phase-specific checkpoint effector kinase, is required for checkpoint signaling and replication slowing; upon treatment with the alkylating agent methyl methane sulfonate, cds1⌬ mutants display a complete checkpoint defect. We have identified proteins downstream of Cds1 required for checkpointdependant slowing, including the structure-specific endonuclease Mus81 and the helicase Rqh1, which are implicated in replication fork stability and the negative regulation of recombination. Removing Rhp51, the Rad51 recombinase homologue, suppresses the slowing defect of rqh1⌬ mutants, but not that of mus81⌬ mutant, defining an epistatic pathway in which mus81 is epistatic to rhp51 and rhp51 is epistatic to rqh1. We propose that restraining recombination is required for the slowing of replication in response to DNA damage.
INTRODUCTIONCheckpoints are signaling cascades important for cells to properly respond to DNA damage by coordinating repair with cell cycle progression. Cells use checkpoints at several critical points in the cell cycle to minimize mutation and maintain viability in the presence of damaged DNA (Kastan and Bartek, 2004). Checkpoint activation prevents entrance into S phase in the presence of DNA damage in G1, prevents entrance into mitosis in the presence of damaged or unreplicated DNA, and reduces replication rate in the presence of damaged template during S phase. The mechanism of the G1 and G2 DNA damage checkpoints are well described (Lukas et al., 2004). However, mechanisms used to slow replication in response to DNA damage during S phase are less clear. Two mechanisms have been invoked for replication slowing in response to DNA damage: reduced replication fork rate and reduced origin firing (Tercero and Diffley, 2001;Merrick et al., 2004). Prevention of origin firing requires factors to act on origins located far from sites of DNA damage and thus represents an in trans mechanism, whereas reduced fork rate likely represents an in cis mechanism in which factors act locally at the site of DNA damage to slow the affected fork. Slowing in response to DNA damage in higher eukaryotes seems to be a combination of both direct action on replication forks and reduced origin firing (Seiler et al., 2007).In the fission yeast Schizosaccharomyces pombe, the wellestablished S-phase DNA damage checkpoint signaling cascade includes Rad3, the central checkpoint kinase and homologue of the metazoan ATR kinase, and Cds1, homologue of the Rad53 and Chk2 effector kinases Rhind and Russell, 1998). However, the checkpoint targets underlying replication slowing are not well understood (Figure 1F). Replication slowing in metazoans is catalyzed by parallel pathways acting downstream of the central checkpoint kinases (Falck et al., 2002;Henry-Mowatt et al., 2003). One pathway depends upon Chk2/Cds1 negative regulation of Cdc25-dependent origin firing; another is ...