2020
DOI: 10.1038/s41598-020-58064-w
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Physically-interpretable classification of biological network dynamics for complex collective motions

Abstract: Understanding complex network dynamics is a fundamental issue in various scientific and engineering fields. Network theory is capable of revealing the relationship between elements and their propagation; however, for complex collective motions, the network properties often transiently and complexly change.A fundamental question addressed here pertains to the classification of collective motion network based on physically-interpretable dynamical properties. Here we apply a data-driven spectral analysis called g… Show more

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Cited by 14 publications
(16 citation statements)
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“…In our case, the validation data was not used and hyperparameters are predetermined as default in Python library “xgboost” (version 1.4.1). “Cross validation procedure” we used here is a test using the test dataset in an analogous way of the usual cross-validation to analyze all data even using a small dataset [ 27 29 ]. In the cross-validation, the original sample is randomly partitioned into five equal sized subsamples.…”
Section: Methodsmentioning
confidence: 99%
“…In our case, the validation data was not used and hyperparameters are predetermined as default in Python library “xgboost” (version 1.4.1). “Cross validation procedure” we used here is a test using the test dataset in an analogous way of the usual cross-validation to analyze all data even using a small dataset [ 27 29 ]. In the cross-validation, the original sample is randomly partitioned into five equal sized subsamples.…”
Section: Methodsmentioning
confidence: 99%
“…2) Data Transformation: We hypothesize that the relationship between different time-series data carries more information than individual data streams. In [14], this dependence among observations is explored in a data-driven spectral analysis using the Koopman operator with the objective of understanding complex biological network dynamics. For this purpose, using a ballgame as an example, the authors transformed the data using the Gaussian kernel…”
Section: Methodology For Incident Detectionmentioning
confidence: 99%
“…In this study, an effective attack is defined as being attacked from the defender's perspectives. When calculating VDEP and VAEP values, we used a cross-validation procedure, which repeats the learning of classifiers using the data of four weeks (36 games) and a prediction using the data of one week (9 games) five times (i.e., data of all five weeks were finally predicted and evaluated) to analyze all games [24][25][26].…”
Section: Datasetmentioning
confidence: 99%