“…Differential expression (DE) analyses comparing water‐stressed plants to controls have been used to identify candidate drought response genes in a wide range of species, including wild barley (Hübner, Korol, & Schmid, ), eucalyptus (Villar et al, ), fir (Behringer, Zimmermann, Ziegenhagen, & Liepelt, ), pine and spruce (Yeaman et al, ), poplar species (Cohen et al, ; Street et al, ), switchgrass (Meyer et al, ) and oaks (Gugger, Peñaloza‐Ramírez, Wright, & Sork, ; Steele, ). Using weighted gene co‐expression network analysis (WGCNA, Langfelder & Horvath, ), co‐expressed genes are grouped into eigengenes, or modules, which can be considered putative functional categories regulated in the same way and can be tested for differences across conditions (Campbell‐Staton, Bare, Losos, Edwards, & Cheviron, ; Kenkel & Matz, ; Passow et al, ; Rose, Seneca, & Palumbi, ).…”