Inadequate pre-slaughter handling practices may compromise animal welfare and pork quality. This study aimed to evaluate the effects of transport period (TT), unloading period (UT), and pre-slaughtering period (WT) on animal thermophysiological indicators and pork pH using a multivariate approach. This study was conducted in a slaughterhouse located in Aquiraz, Ceará state, Brazil. A total of 60 mestizo pigs with 107 ± 5 kg body weight were distributed into three experimental groups: group A (TT = 180 min, UT ≤ 10 min, and WT = 24 hours), group B (TT = 60 min, UT ≤ 15 min, and WT = 18 hours), and group C (TT = 45 min, UT ≤ 5 min, and WT = 24 hours). Canonical discriminant analysis was implemented and the differences between treatments are represented graphically. The first two components accounted for 97% treatments. The discriminant analysis showed that group C presented multivariate differences in relation to others, particularly with high rectal temperature before slaughter (38.4 ± 0.23 °C) and respiratory rate (131 ± 7.0 breaths min-1) and rectal temperature (39.7 ± 0.18 °C) upon arrival at the slaughterhouse. Transport period (TT), unloading period (UT), and thermal stress of the facilities influenced physiological variables, such as rectal temperature and respiratory rate. Furthermore, the physiological stress variables also favored cuts with basic pH, resulting in quality loss.