Endometrial cancer is the most commonly diagnosed gynaecological malignancy. Unfortunately, 15–20% of women demonstrate persistent or recurrent tumours that are refractory to current chemotherapies. We previously identified activating mutations in fibroblast growth factor receptor 2 (
FGFR
2) in 12% (stage I/
II
) to 17% (stage
III
/
IV
) endometrioid
EC
s and found that these mutations are associated with shorter progression‐free and cancer‐specific survival. Although
FGFR
inhibitors are undergoing clinical trials for treatment of several cancer types, little is known about the mechanism by which they induce cell death. We show that treatment with
BGJ
398,
AZD
4547 and
PD
173074 causes mitochondrial depolarization, cytochrome c release and impaired mitochondrial respiration in two
FGFR
2‐mutant
EC
cell lines (
AN
3
CA
and
JHUEM
2). Despite this mitochondrial dysfunction, we were unable to detect caspase activation following
FGFR
inhibition; in addition, the pan‐caspase inhibitor Z‐
VAD
‐
FMK
was unable to prevent cell death, suggesting that the cell death is caspase‐independent. Furthermore, while
FGFR
inhibition led to an increase in
LC
3 puncta, treatment with bafilomycin did not further increase lipidated
LC
3, suggesting that
FGFR
inhibition led to a block in autophagosome degradation. We confirmed that cell death is mitochondrial‐dependent as it can be blocked by overexpression of Bcl‐2 and/or Bcl‐
XL
. Importantly, we show that combining
FGFR
inhibitors with the
BH
3 mimetics
ABT
737/
ABT
263 markedly increased cell death
in vitro
and is more effective than
BGJ
398 alone
in vivo
, where it leads to marked tumour regression. This work may have implications for the design of clinical trials to treat a wide range of patients with
FGFR
‐dependent malignancies.