“…The use of marker pigments to identify and quantify the various algal groups of phytoplankton has been widely and successfully used in marine, estuarine and references therein), freshwater environments (Woitke et al, 1996;Yacobi et al, 1996;Edelkraut et al, 1997;Descy et al, 2000Descy et al, , 2005Fietz & Nicklisch, 2004Buchaca et al, 2005) and even for the study of photosynthetic bacteria (Steenbergen et al, 1989;Hurley & Watras, 1991;Vila et al, 1996;Goericke, 2002). However, as the biomass estimation of algal groups is derived from pigment concentrations in the water column by calculations based on marker pigment:chlorophyll a (chl a hereafter) ratios, the technique is prone to errors related to changes in the cell pigment content, which may result from acclimation to the light climate and from nutrient deficiency.…”