Considering currently operative European and worldwide regulations, preserving and/or improving the state of remnant alluvial floodplains is a high-priority goal for experts. One of the threats is the decrease of lateral connectivity: due to the erosion in the mainstem riverbed and the sedimentation of the floodplain and its channels, the bed elevation gap slowly increases between the main channel and the side branches and oxbows of the floodplain. Without revitalization measures, this progress predicts severe ecological consequences. As an example, and as a continuation of our earlier work, we considered the Gemenc floodplain forest along the Danube, in Hungary. We set up a two-dimensional coupled hydrodynamic and sediment transport computational model to describe floodplain deposition dynamics. Model validation was carried out with historical data, i.e., two ground elevation sets measured in 1990 and in 2009, respectively. Our aim was 1. to show, how coarse resolution measured data can be used for validating a large-scale model in terms of sediment deposition processes, and 2. to interpret the first results on some areas exposed to strong deposition, after validation. Showing good agreements in three pillars: magnitude of estimation, spatial tendencies and spatial patterns, the model was deemed valid. We were also able to observe a clear gradient, along which areas could be categorized with high, medium and small extent of sediment deposition. With this model, the sediment dynamics in the Gemenc floodplain forest can be assessed, with special attention to the impact analysis of restoration measures to improve lateral connectivity conditions.