“…Pathway‐based omics data integration is another popular approach used by plant biologists to get a broad over‐view of metabolic pathways under a given set of conditions. There are several web‐based or standalone tools that allow pathway‐based integration of omics data including PathVisio (van Iersel et al ., ), Paintomics (Garcia‐Alcalde et al ., ), MapMan (Thimm et al ., ), INMEX (Xia et al ., ), IMPaLA (Kamburov et al ., ; Eichner et al ., ), SAMNetWeb (Gosline et al ., ), pwOmics (Wachter and Beissbarth, ), GabiPD (Riano‐Pachon et al ., ), PODC (Ohyanagi et al ., ), MONGKIE (Jang et al ., ), MetaMapR (Grapov et al ., ), KEGG Mapper (Kanehisa et al ., ), Marvis‐pathways (Kaever et al ., ), 3Omics (Kuo et al ., ) and mixOmics (http://mixomics.org/). Many of these tools have been reviewed in great detail (Higashi and Saito, ; Fondi and Lio, ).…”