Phosphorodiamidate morpholino oligomers (PMO) are a class of uncharged single-stranded DNA analogs modified such that each subunit includes a phosphorodiamidate linkage and morpholine ring. PMO antisense agents have been reported to effectively interfere with the replication of several positive-strand RNA viruses in cell culture. The filoviruses, Marburg virus and Ebola virus (EBOV), are negative-strand RNA viruses that cause up to 90% lethality in human outbreaks. There is currently no commercially available vaccine or efficacious therapeutic for any filovirus. In this study, PMO conjugated to arginine-rich cell-penetrating peptide (P-PMO) and nonconjugated PMO were assayed for the ability to inhibit EBOV infection in cell culture and in a mouse model of lethal EBOV infection. A 22-mer P-PMO designed to base pair with the translation start site region of EBOV VP35 positive-sense RNA generated sequence-specific and time-and dose-dependent inhibition of EBOV amplification in cell culture. The same oligomer provided complete protection to mice when administered before or after an otherwise lethal infection of EBOV. A corresponding nonconjugated PMO, as well as nonconjugated truncated versions of 16 and 19 base residues, provided length-dependent protection to mice when administered prophylactically. Together, these data suggest that antisense PMO and P-PMO have the potential to control EBOV infection and are promising therapeutic candidates.The Filoviridae family consists of only two genera, Ebola virus (EBOV) and Marburg virus (MARV), and belongs to the order Mononegavirales. Filoviruses possess a nonsegmented, single-stranded RNA genome of negative polarity that contains seven genes. The nontranscribed genomic ends, termed "leader" (3Ј end) and "trailer" (5Ј end), harbor cis-acting signals important for viral transcription, replication, and encapsidation. Transcription and replication of the viral genome requires viral proteins (VP) VP30 and VP35, the nucleoprotein (NP), and viral polymerase L (27, 28). Along with its role in viral RNA synthesis, VP35 has also been shown to act as a type I interferon antagonist (2). As the only viral surface protein, the glycoprotein (GP) is involved in binding and entry of the virion into host cells. The matrix protein VP40 functions in virus assembly and budding, and it has been suggested that the minor matrix protein VP24 also plays a role in these processes (7,14).Most MARV and EBOV species cause a severe hemorrhagic fever associated with fatality rates up to 90% in humans and nonhuman primates (8, 32). Due to the high mortality rates and the lack of any approved effective human therapeutic or vaccine (5), filoviruses have been classified as biological safety level 4 (BSL-4) agents. Many approaches have been employed in attempts to develop effective therapies for EBOV, including the administration of nucleoside analogues (i.e., ribavirin), immune globulins, type I interferons and other cytokines, anticoagulants, and therapeutic vaccines (10,13,19,20,24,37,39,40). To date, th...