In Neurospora crassa, a recessive mutant allele of a nuclear gene, nd (natural death), causes rapid degeneration of the mitochondrial DNA, a process that is manifested phenotypically as an accelerated form of senescence in growing and stationary mycelia. To examine the mechanisms that are involved in the degradation of the mitochondrial chromosome, several mitochondrial DNA restriction fragments unique to the naturaldeath mutant were cloned and characterized through restriction, hybridization, and nucleotide sequence analyses. All of the cloned DNA pieces contained one to four rearrangements that were generated by unequal crossing-over between direct repeats of several different nucleotide sequences that occur in pairs and are dispersed throughout the mitochondrial chromosome of wild-type Neurospora strains. The most abundant repeats, a family of GC-rich sequences that includes the so-called Pstl palindromes, were not involved in the generation of deletions in the nd mutant. The implication of these results is that the nd allele hyperactivates a general system for homologous recombination in the mitochondria ofN. crassa. Therefore, the nd+ allele either codes for a component of the complex of proteins that catalyzes recombination, and possibly repair and replication, of the mitochondrial chromosome or specifies a regulatory factor that controls the synthesis or activity of at least one enzyme or ancillary factor that is affiliated with mitochondrial DNA metabolism.In Neurospora crassa, a recessive mutation in the nd (natural-death) locus on linkage group I causes a progressive deterioration of the growth and reproductive potentials of asexually propagated mycelia (57). Phenotypically, the process is manifested as an accelerated senescence syndrome and leads to cell death after two to four sequential (weekly) passages of asexual spores (conidia) to fresh agar slants (56, 57). Consequently, the mutant has been used as a model system for the study of cellular aging (38,44,47,50,52). The most recent of these studies has shown that the nd mutation causes the progressive and coordinate loss of several different mitochondrial functions in growing and stationary-phase mycelia (50, 56). The accelerated degeneration of the respiratory capacity of the cells is paralleled by the appearance of a rather heterogeneous population of grossly altered mitochondrial DNAs (mtDNAs) (56). These observations led to the proposal that the wild-type allele of the nd gene codes for a protein that protects the mitochondrial chromosome from intra-and intermolecular recombination or breakage events that potentially cause deletions, inversions, and other deleterious rearrangements (56).In recent years, other senescence syndromes have been studied extensively in the filamentous fungi, but none of these is caused by mutation of a nuclear gene (reviewed in reference 35). Instead, the predisposition to senesce prematurely and the symptoms that are associated with these aging processes are inherited maternally. Furthermore, it has been shown repeat...