Plastid DNA variation in Prunus serotina var. serotina (Rosaceae), a North American tree invading Europe

Petitpierre, Blaise; Pairon, Marie; Broennimann, Olivier; Jacquemart, Anne‐Laure; Guisan, Antoine; Besnard, Guillaume

doi:10.1007/s10342-009-0287-1

Cited by 15 publications

(10 citation statements)

References 22 publications

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“…They found that cpDNA of the F1 generation was inherited maternally and fi rst proved that the cpDNA in conifers is of maternal inheritance. Our results also confi rm the high variability of chloroplast non-coding regions, especially in trnL-trnF sequences, which is suitable for distinguishing species with close genetic relationships (Taberlet et al, 1991;Chen et al, 2002;Petitpierre et al, 2009). …”

Section: Discussionsupporting

confidence: 79%

“…For the restriction enzyme digestion, we referred to Qi et al (1999), Rajora and Dancik (1992), Hela et al (2004) and Petitpierre et al (2009). The amplifi ed fragments of 12 primers were digested by fi ve restrictive endonucleases, i.e., AluI, EcoRI, HinfI, HindIII and TaqI, and retained overnight at the optimum reaction temperature of each enzyme.…”

Section: Restriction Enzyme Analysismentioning

confidence: 99%

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Polymorphism and heredity of cpDNA and mtDNA in the Section Leuce of Populus

Cui

Jin

et al. 2011

For. Stud. China

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The chloroplast DNA (cpDNA) and mitochondrial DNA (mtDNA) of 16 Populus species (Section Leuce) and their F1 generation were detected using PCR-RFLP technique. The results show that cpDNA in the F1 generation of 22 hybrid combinations was inherited maternally, which supported the conclusions of the study of plasmid cytology. The mtDNA fragments amplifi ed by PCR were consistent with the restriction maps in all hybrid combinations and no polymorphism was detected, indicating that the Section Leuce is highly conserved in mitochondrial gene sequences. These results provided direct evidence of maternal chloroplast inheritance in Populus tomentosa, P. bolleana, P. davidiana, P. adenopoda, P. tomentosa × P. bolleana, P. alba × P. glandulosa and P. alba × P. tomentosa.

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Section: Discussionsupporting

confidence: 79%

Section: Restriction Enzyme Analysismentioning

confidence: 99%

Polymorphism and heredity of cpDNA and mtDNA in the Section Leuce of Populus

Cui

Jin

et al. 2011

For. Stud. China

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“…[16] constructed phylogenetic trees based on separate data sets using the sequence of ITS and trn L- trn F, but they were not statistically congruent, which indicates that the 13 Morus species were of non-monophyletic origin. The sequence variations of the other intergenic regions in the chloroplast genome could provide genetic information for phylogenetic analyses as well, as reported in Prunus serotina [25] and Elymus caninus [26] etc. In this study, 10 cpDNA non-coding regions, accounting for 17.1 kb (about 10.79% of the chloroplast genome) were specifically amplified and 70 primer–enzyme combinations were used in an attempt to detect interspecies and intra-species polymorphism.…”

Section: Resultsmentioning

confidence: 98%

Genetic relationship in mulberry (MorusL.) inferred through PCR–RFLP andtrnD-trnT sequence data of chloroplast DNA

Zhang

Sun

et al. 2014

Biotechnology & Biotechnological Equipment

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Ten universal primer pairs of the plant chloroplast genome were used to amplify the chloroplast DNA (cpDNA) non-coding regions in eight mulberry (Morus spp.) genotypes, including M. mongolica, M. bombycis, M. alba, M. atropurpurea and M. multicaulis. Subsequently, the polymerase chain reaction (PCR) products were digested by seven restriction enzymes and the trnD-trnT fragment for sequence alignment, and the variations were expected to provide the genetic information for system classification. The results from this study showed that: (1) 10 cpDNA primer pairs could be used for successful amplification in the tested materials, with approximately 17.1 kb of the chloroplast genome analysed. The 152 marker loci were detected by 70 primer/restriction endonuclease combinations, among which the trnD-trnT non-coding region digested by AluI, HinfI, MvaI and RsaI was detected by visible fragment length variation in different genotypes of the genus Morus. (2) eight Morus L. genotypes were divided into two groups based on the digesting pattern discrepancy through cpDNA. The M. multicaulis genotypes displayed diversity on an intraspecies level. ‘Nongsang No.12’ was identical with the female parent ‘Beiqu No.1’ (M. atropurpurea) in the surveyed sequence, but different from the male parent ‘Tongxiangqing’ (M. multicaulis), suggesting that the cpDNA was maternal inheritance in Morus L. (3) There were two deletion fragments (451–456 bp; 840–863bp) and six base point mutations in the trnD-trnT region based on homologous sequence alignment. The sequence of trnD-trnT in the cpDNA of mulberry could provide more genetic information for phylogenetic analysis and pedigree identification.

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“…could also be used for P. serotina, a conclusion seconded with experimentation by Wünsch and Hormaza (2007). The use of P. serotina, Q. robur, and Q. petraea cpDNA has shown that significant diversity can be seen even in the presence of low sequence polymorphisms (Petit et al 2002;Petitpierre et al 2009).…”

Section: Marker Technologies In Conservation and Tree Improvementmentioning

confidence: 97%

Biotechnological efforts for preserving and enhancing temperate hardwood tree biodiversity, health, and productivity

Pijut

Lawson

Michler

2010

In Vitro Cell.Dev.Biol.-Plant

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Hardwood tree species in forest, plantation, and urban environments (temperate regions of the world) are important biological resources that play a significant role in the economy and the ecology of terrestrial ecosystems, and they have aesthetic and spiritual value. Because of these many values of hardwood tree species, preserving forest tree biodiversity through the use of biotechnological approaches should be an integral component in any forestry program in addition to large-scale ecologically sustainable forest management and preservation of the urban forest environment. Biotechnological tools are available for conserving tree species as well as genetic characterization that will be needed for deployment of germplasm through restoration activities. This review concentrates on the biotechnological tools available for conserving, characterizing, evaluating, and enhancing hardwood forest tree biodiversity. We focus mainly on species grown for lumber and wood products, not species grown mainly for fiber (pulp and paper production). We also present a brief summary of the importance of non-wood forest products from temperate hardwood tree species (a research area that needs further development using biotechnological techniques) and a few case studies for preserving forest tree biodiversity.

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Plastid DNA variation in Prunus serotina var. serotina (Rosaceae), a North American tree invading Europe

Cited by 15 publications

References 22 publications

Polymorphism and heredity of cpDNA and mtDNA in the Section Leuce of Populus

Polymorphism and heredity of cpDNA and mtDNA in the Section Leuce of Populus

Genetic relationship in mulberry (MorusL.) inferred through PCR–RFLP andtrnD-trnT sequence data of chloroplast DNA

Biotechnological efforts for preserving and enhancing temperate hardwood tree biodiversity, health, and productivity

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