The emergence and rapid proliferation of the novel coronavirus
(SARS-CoV-2) resulted in a global pandemic, with over 6,000,000
cases and nearly 400,000 deaths reported worldwide by the end of
May 2020. A rush to find a cure prompted re-evaluation of a
range of existing therapeutics vis-à-vis their potential
role in treating COVID-19, placing a premium on analytical tools
capable of supporting such efforts. Native mass spectrometry
(MS) has long been a tool of choice in supporting the
mechanistic studies of drug/therapeutic target interactions, but
its applications remain limited in the cases that involve
systems with a high level of structural heterogeneity. Both
SARS-CoV-2 spike protein (S-protein), a critical element of the
viral entry to the host cell, and ACE2, its docking site on the
host cell surface, are extensively glycosylated, making them
challenging targets for native MS. However, supplementing native
MS with a gas-phase ion manipulation technique (limited charge
reduction) allows meaningful information to be obtained on the
noncovalent complexes formed by ACE2 and the receptor-binding
domain (RBD) of the S-protein. Using this technique in
combination with molecular modeling also allows the role of
heparin in destabilizing the ACE2/RBD association to be studied,
providing critical information for understanding the molecular
mechanism of its interference with the virus docking to the host
cell receptor. Both short (pentasaccharide) and relatively long
(eicosasaccharide) heparin oligomers form 1:1 complexes with
RBD, indicating the presence of a single binding site. This
association alters the protein conformation (to maximize the
contiguous patch of the positive charge on the RBD surface),
resulting in a notable decrease in its ability to associate with
ACE2. The destabilizing effect of heparin is more pronounced in
the case of the longer chains due to the electrostatic repulsion
between the low-p
I
ACE2 and the heparin
segments not accommodated on the RBD surface. In addition to
providing important mechanistic information on attenuation of
the ACE2/RBD association by heparin, the study demonstrates the
yet untapped potential of native MS coupled to gas-phase ion
chemistry as a means of facilitating rational repurposing of the
existing medicines for treating COVID-19.