The ultrastructure of the glomerular filtration slit is still controversial. In the last 30 years, observations from transmission electron microscopy (TEM) and theoretical analysis of solute clearance produced conflicting results. Here, we used scanning EM with a high-sensitivity detector to image the deepest regions of the filtration slits and report a previously undescribed organization of the slits' ultrastructure. In contrast to previous TEM imaging, we observed circular and ellipsoidal pores in the podocyte junctions mainly located in the central region of the slit diaphragm. The normal mean pore radius estimated by digital morphometric analysis had a log-normal distribution, with an average value of 12.1 nm. In proteinuric pathologic conditions, the mean pore radius values were also log-normally distributed with the presence of some very large pores, exceeding the sizes observed in normal conditions. Our morphologic analysis suggests that the filtration slit is a heteroporous structure instead of the previously proposed zipper-like structure. Selective changes in the ultrastructural organization of the pores may be responsible for the increased filtration of plasma proteins in glomerular disease. The permeability properties of the glomerular capillary wall allow the filtration of high water flow and small solutes but efficient retention of plasma proteins the size of albumin or larger. 1 It has been indicated that most of the restriction of macromolecule ultrafiltration is caused by the epithelial filtration slits, because plasma proteins can cross endothelial cells and glomerular basement membrane (GBM) more easily. 2 Changes in glomerular permselective function resulting in increased glomerular filtration of plasma proteins and incomplete tubular reabsorption are responsible for loss of proteins in the urine. These events have been linked to the progression of renal diseases. 3 With the aim to characterize the mechanisms behind proteinuria, in the last 30 years, solute clearance techniques have been used to estimate the selective properties of the glomerular barrier in experimental models of nephropathy and in patients. In particular, glomerular size-selective function has been studied using renal clearance of neutral test macromolecules (i.e., neutral dextran and Ficoll) that are not secreted or reabsorbed at the tubular level. Theoretical models of glomerular size selectivity have been conventionally used to derive intrinsic membrane selective properties from fractional clearance of test macromolecules in terms of density and size of hypothetical pores perforating the glomerular capillary wall. 2,4,5 Thus, according to the two-pore