There are species differences between human histamine H 1 receptor (hH 1 R) and guinea pig (gp) histamine H 1 receptor (gpH 1 R) for phenylhistamines and histaprodifens. Several studies showed participation of the second extracellular loop (E2-loop) in ligand binding for some G protein-coupled receptors (GPCRs). Because there are large species differences in the amino acid sequence between hH 1 R and gpH 1 R for the N terminus and E2-loop, we generated chimeric hH 1 Rs with gp E2-loop (h gpE2 H 1 R) and gp N terminus and gp E2-loop (h gpNgpE2 H 1 R). hH 1 R, gpH 1 R, and chimeras were expressed in Sf9 insect cells. [3 H]Mepyramine binding assays and steadystate GTPase assays were performed. In the series hH 1 R Ͼ h gpE2 H 1 R Ͼ h gpNgpE2 H 1 R, we observed a significant decrease in potency of histamine 1 in the GTPase assay. For phenoprodifen 5 and the chiral phenoprodifens 6R and 6S, a significant decrease in affinity and potency was found in the series hH 1 R Ͼ h gpE2 H 1 R Ͼ h gpNgpE2 H 1 R. In addition, we constructed new active-state H 1 R models based on the crystal structure of the human  2 -adrenergic receptor (h 2 AR). Compared with the H 1 R active-state models based on the crystal structure of bovine rhodopsin, the E2-loop differs in its contact to the ligand bound in the binding pocket. In the bovine rhodopsin-based model, the backbone carbonyl of Lys187 (gpH 1 R) interacts with large histaprodifens in the binding pocket, but in the h 2 ARbased model, Lys187 (gpH 1 R) is located distantly from the binding pocket. In conclusion, the differences in N terminus and E2-loop between hH 1 R and gpH 1 R exert an influence on affinity and/or potency for histamine and phenoprodifens 5, 6R, and 6S.