PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates

Distinct developmental fates in Drosophila melanogaster are specified by quantitative differences in transcription factor occupancy on a common set of bound regions.

Abstract Background: We previously established that six sequence-specific transcription factors that initiate anterior/ posterior patterning in Drosophila bind to overlapping sets of thousands of genomic regions in blastoderm embryos. While regions bound at high levels include known and probable functional targets, more poorly bound regions are preferentially associated with housekeeping genes and/or genes not transcribed in the blastoderm, and are frequently found in protein coding sequences or in less conserved non-coding DNA, suggesting that many are likely non-functional.

show abstract

PointCloudXplore: a visualization tool for 3D gene expressiondata

Rübel¹,

Weber²,

Keränen³

et al. 2006

View full text Add to dashboard Cite

PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates

Cited by 7 publications

References 13 publications

3D-Parallel Coordinates: Visualization for time varying multidimensional data

3D-Parallel Coordinates: Visualization for time varying multidimensional data

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

PointCloudXplore: a visualization tool for 3D gene expressiondata

Contact Info

Product

Resources

About