While targeting CDK4/6 is highly effective in breast cancer and is a promising approach for brain tumor treatment, palbociclib, FDA-approved CDK4/6 inhibitor, failed to induce durable benefits in preclinical models of brain cancers (intrinsic pontine glioma and medulloblastoma) and in clinical trial against glioblastoma. In our study in transgenic, medulloblastoma-prone mice, orally dosed palbociclib induces no benefits. However, nanoparticle formulation of palbociclib, POx-Palbo enables systemic administration of the drug, improves CNS pharmacokinetics and induces survival benefit. In addition, we analyzed the response to the POx-Palbo treatment using scRNA-seq to identify treatment targets in palbociclib resistant cells. In parallel, we tested the potential of agents targeting SHH signaling or DNA replication to limit resistance, identifying combination regiment of palbociclib and etoposide which slightly improved efficacy. The brains of mice repeatedly treated with POx-Palbo showed a distinct population of proliferating cells cluster with a transcriptomic profile that was different from proliferating cells in control tumors. With Gene Ontology (GO) enrichment analysis of the genes in each cluster, we found that POx-Palbo treatment increased the expression of the glutamate transporter Slc1a2 and decreased diverse ribosomal genes, which both are indicating the inhibition of mTORC1 signaling pathway. Treatment with small molecule mTORC1 inhibitor, sapanisertib, induced survival benefits and the combination of palbociclib and sapanisertib markedly increased anti-tumor efficacy and survival with dramatic suppression of phosphorylation in RB and 4EBP1, indicating a potentially effective new therapy for pediatric medulloblastoma.One Sentence SummaryNanoparticle-delivered palbociclib enable CDK4/6 inhibitor therapy while combination with mTORC1 inhibitor sapanisertib induces long term benefits in SHH medulloblastoma.