Poly(ADP-ribose) polymerases from Ehrlich ascites tumor cells, pig thymus, and HeLa S3 cells were purified by chromatography on DNA-agarose and Blue Scpharose. A molecular mass of 112000 Da was found for all three polymerases. Fragmentation of polyacrylamide-gel-embedded polymerases with cyanogen bromide, and subsequent analysis of the fragments by polyacrylamide gradient gel electrophoresis, showed great similarities with regard to fragment sizes. The amino acid composition of the pig thymus enzyme was very similar to that of the polymerase from Ehrlich ascites tumor cells, and the terminal amino group appeared to be blocked. The HeLa polymerase electrofocused in two peaks at pH 8.8 and 5.5, while the Ehrlich ascites tumor cell and the pig thymus enzyme focused in single peaks at pH 9.4 and 9.6, respectively. Removal of residual DNA by treatment with hydroxyapatite abolished these differences in apparent isoelectric points ; all three polymerases focused at pH 9.8. No important differences were found with regard to the effect of a number of substances on the synthesis of poly(ADP-ribose). Apparent Michaelis constants for NAD of 41 pM, 48 pM, and 34 pM were found for polymerase from Ehrlich ascites tumor cells, pig thymus, and HeLa S3 cells, respectively. All these results indicate that the three polymerases, which represented the major poly(ADP-ribose) polymerase activity in the organisms investigated, are closely related proteins.During the past few years, poly(ADP-ribose) polymerases from various sources have been extensively purified and characterized [l-91. In all cases, the isolated enzyme is a fairly basic protein. The molecular masses reported, however, vary from 50000 D a for the rat liver enzyme [I] to 130000 Da for polymerase from bovine thymus [4] and from Ehrlich ascites tumor cells [8]. These variations may indicate the presence of more than one poly(ADP-ribose) polymerase in an organism. The existence of several protein acceptors of the polymer further support this view [lo]. As to the catalytic properties of the various preparations, several of the authors cited above have shown that binding of substrates and maximum velocities are greatly influenced by the presence and nature of other macromolecules, such as DNA and histones. Since the effect of DNA, for instance, on the polymerase reaction, will depend on factors such as molecular weight of the DNA, the presence of single stranded DNA, the presence of nicks and breaks in the DNA, and so on, a comparison between the kinetic constants determined in different laboratories will give little information as to the similarities or dissimilarities between different polymerase preparations.In the present work, some physical and biochemical properties of poly(ADP-ribose) polymerases from Ehrlich ascites tumor cells, pig thymus, and HeLa S3 cells purified by methods describcd by us previously [S, 9,111, were measured under identical conditions. In all cases, the enzyme isolated represented the major poly(ADP-ribose)-synthesizing activity present in the nuc...