In the present work, a unique series of random polybenzimidazole (PBI) copolymers consisting of the recently reported novel isomeric AB‐PBI (i‐AB‐PBI) and the well known AB‐PBI were synthesized. The i‐AB‐PBI incorporates additional linkages (2,2 and 5,5) in the benzimidazole sequence when compared with AB‐PBI. Random copolymers, varying in composition at 10 mol % increments, were synthesized to evaluate the effects of sequence isomerism in the polymer main chain without altering the fundamental chemical composition or functionality of a polymer chain consisting of 2,5‐benzimidazole units. Polymer solutions were prepared in polyphosphoric acid (PPA) and cast into membranes using the sol–gel PPA process. The resulting polymers were found to have high inherent viscosities (>2.0 dL/g) and showed elevated membrane proton conductivities (∼0.2 S/cm) under anhydrous conditions at 180 °C. Fuel cell performance evaluations were conducted, and an average output voltage ranging from 0.5 to 0.60 V at 0.2 A/cm2 was observed for hydrogen/air at an operational temperature of 180 °C without applied backpressure or humidification. Herein, we report for the first time glass transition (Tg) temperatures for AB‐PBI, i‐AB‐PBI, and an anomalous Tg effect for the series of randomized PBIs. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014, 52, 619–628