Aberrant gene silencing accompanied by DNA methylation is associated with neoplastic progression in many tumors that also show global loss of DNA methylation. Using conditional inactivation of de novo methyltransferase Dnmt3b in Apc Min/؉ mice, we demonstrate that the loss of Dnmt3b has no impact on microadenoma formation, which is considered the earliest stage of intestinal tumor formation. Nevertheless, we observed a significant decrease in the formation of macroscopic colonic adenomas. Interestingly, many large adenomas showed regions with Dnmt3b inactivation, indicating that Dnmt3b is required for initial outgrowth of macroscopic adenomas but is not required for their maintenance. These results support a role for Dnmt3b in the transition stage between microadenoma formation and macroscopic colonic tumor growth and further suggest that Dnmt3b, and by extension de novo methylation, is not required for maintaining tumor growth after this transition stage has occurred.Altered DNA methylation in the form of global hypomethylation and regional hypermethylation is one of the most consistent epigenetic changes in cancer (18). Global hypomethylation, which is frequently observed at early stages of tumorigenesis in human cancer (10, 11), promotes tumor development in several mouse models and causes chromosomal instability in cultured fibroblasts (9, 12). After the initial observation of DNA hypermethylation within the retinoblastoma tumor suppressor gene (14), dozens of genes have been shown to be hypermethylated and transcriptionally silenced in tumors (2,20). Although the consequences of global hypomethylation and gene-specific hypermethylation have been mechanistically connected to chromosome instability and transcriptional silencing, respectively, the causes of aberrant DNA methylation patterns are currently unknown. DNA methylation is catalyzed by a family of three DNA methyltransferases: Dnmt1, Dnmt3a, and Dnmt3b. Although the three Dnmts partially cooperate to establish and maintain genomic methylation patterns (21), they also have distinctive functions. Dnmt1 has a preference for hemimethylated DNA (1, 15, 38), and indeed a hypomorphic allele of Dnmt1 has been shown to cause global DNA hypomethylation (12). Dnmt1 is therefore considered the major maintenance methyltransferase. Dnmt3a and -3b probably function as de novo DNA methyltransferases because these enzymes were shown to have equal preferences in vitro for unmethylated and hemimethylated DNA (25, 26). Furthermore, de novo methylation of a subset of the CpG sites on stable episomes is detected in human cells overexpressing the murine Dnmt3a or Dnmt3b1 protein (17). Consistent with these notions, inactivation of both Dnmt3a and Dnmt3b by gene targeting blocks de novo DNA methylation in embryonic stem (ES) cells and early embryos, as well as de novo methylation of imprinted genes in germ cells (25,26). These findings support the view that Dnmt3a and Dnmt3b function primarily as de novo methyltransferases during normal development. Nevertheless, the role of...