Deposited dust (DD) in urban environments contains carcinogenic organic compounds. The Indoor air quality is greatly affected by heating, ventilation, and air conditioning systems (HVAC), and in the Middle East most of the buildings are equipped by HVAC on top of them. It is possible that the DD on the roof near this equipment would be transferred to an indoor area. For these reasons, 40 samples of the over the roof DD were prepared, and organic compounds (16PAH compounds, 20n-alkane homologs, 8hopanes, and 6steranes) of DD were extracted using Soxhlet and analyzed by GC-MS. Source identification of organic compounds conducted by ring classification, diagnostic ratios, and factor analysis (FA). The results showed that the average (±SD) of total PAHs, n-alkanes, hopanes and steranes in DD were 1356.00 (±291.45) ng kg−1dw, 3211.65 (±969.18), 146.37 (±79.45) and 469.76 (±188.25) µg.g_1dw, respectively. The highest concentration of organic compounds was in the city center, where traffic congestion is common. Diagnostic ratios of n-alkanes results showed the dominant source is vehicular emission. FA results indicated vehicular emission and biogenic sources. In agreement, the results of sterane and hopane profiles confirm these results. On the other hand, the PAHs diagnostic ratios results indicated petroleum combustion sources. In this regard, FA findings showed combustion from vehicular emission and natural gas and wood combustion were the main factors. Furthermore, the incremental lifetime cancer risk was calculated as 8.45× 10−12 for children and 9.80 × 10−7 for adults, and the imposed risk was negligible.