Magnolia sieboldii ssp. japonica, distributed mainly in western Japan, is restricted to high elevation areas (1000-2000 m above sea level) and usually forms small isolated populations. Four microsatellite loci were assayed for 19 populations from six regions spanning the range of distribution, and the levels and distribution of genetic variation were estimated. All four loci were variable, with a total of 39 alleles, but the overall level of microsatellite genetic variation was low, especially compared with a related species, M. obovata. Genetic structure in M. sieboldii was characterised by low intrapopulational genetic variation (A = 3.74 and H o = 0.366 on average) and high genetic differentiation even among regional populations. Highly significant isolation-by-distance (IBD) models at the short distance were detected. Genetic drift and limited gene flow was considered to be important Keywords: Magnolia sieboldii; microsatellite: genetic diversity; population size; genetic drift; isolation-by-distance
IntroductionWithin a species, the genetic structures of plant populations are determined by factors such as mutation, migration, selection and genetic drift. The effects of genetic drift are important when populations are small or isolated. Species consisting of such populations usually have small within-population genetic variation and large among-population differentiation (Loveless and Hamrick, 1984). Genetic information can be useful in the conservation of rare plant species, which usually consist of small and/or isolated populations. For example, the risk of extinction of a population or a species can be assessed, and the steps and priorities necessary to prevent extinction can be determined by estimating the level of genetic diversity, the effect of genetic drift, and the extent of genetic differentiation and gene flow, from genetic data (Ellstrand and Elam, 1993). However, the genetic variability of isolated or local endemic populations sometimes collapses because of severe genetic drift or historical bottlenecks; in such cases little or no genetic variation is detected in the population using genetic markers, such Correspondence: S Kikuchi, Department of Forest Genetics, Forestry and Forest Products Research Institute, Kukizaki, in determining the genetic structure within regions. Total genetic differentiation was remarkably high (F ST = 0.488 and R ST = 0.538), suggesting genetic barriers among regions. Neighbour-joining dendrograms relating the 19 populations, and further analysis on the IBD models, revealed that a stepwise mutation model was more suited than an infinite allele model to explain the genetic differentiation among regions. It is suggested that mutation at microsatellite loci might be influential in generating the genetic differentiation among regions. These results showed the potential of hypervariable microsatellite loci to evaluate the effects of genetic drift and population isolation within regions, and to detect genetic distinctiveness, in spite of the loss of overall genetic variati...