Abstract. Recurrent glacial advances have shaped community histories across the planet. While biogeographic responses to glaciations likely varied with latitude, the consequences for temperate marine communities histories are less clear. By coalescent analyses of multiloci DNA sequence data (mitochondrial DNA control region, ␣-enolase intron, and ␣-tropomyosin intron) collected from a low-dispersing sister pair of rocky intertidal fishes commonly found from southeastern Alaska to California (Xiphister atropurpureus and X. mucosus), we uncover two very different responses to historical glaciations. A variety of methods that include a simulation analysis, coestimates of migration and divergence times, and estimates of minimum ages of populations sampled up and down the North American Pacific coast all strongly revealed a history of range persistence in X. atropurpureus and extreme range contraction and expansion from a southern refugium in X. mucosus. Furthermore, these conclusions are not sensitive to the independent estimates of the DNA substitution rates we obtain. While gene flow and dispersal are low in both species, the widely different histories are rather likely to have arisen from ecological differences such as diet breadth, generation time, and habitat specificity. The periodic glacial epochs of the Quaternary were prolonged and occupied nearly 80% of the last 2 million years (Lambeck et al. 2002). The composition of Northern Hemisphere temperate communities during warmer interglacial periods such as the current Holocene era is widely thought to be the result of range expansion and colonization from southern glacial refugia, leading to directional selection favoring generalists with higher dispersal ability and lower overall taxonomic diversity than tropical regions (Valentine and Jablonski 1993; Hewitt 1999;Dynesius and Jansson 2000). While these glaciations have often resulted in genetic signatures of low population divergence and gradients in genetic diversity in temperate North American and European taxa (Avise 2000; Hewitt 2000;Lessa et al. 2003), some genetic studies are increasingly suggesting that many temperate communities consist of taxa that retained the geographical extent of their ranges in cryptic multiple refugia (Stewart and Lister 2001;Jacobs et al. 2004).The community composition of temperate intertidal areas such as the northeastern Pacific is likely to be the result of both historical processes such as these cyclical glaciations as well as contemporary oceanographic processes and changes (Horn and Allen 1978;Roy et al. 1995;Lindberg and Lipps 1996; Roy et al. 2001;Hohenlohe 2004). The craggy and complex coastline of the northeastern Pacific intertidal contains a highly diversified biota, yet it has experienced coastal sea ice, lower sea surface temperatures (SST), shifts in major current patterns (Sabin and Pisias 1996;Lyle et al. 2000;Herbert et al. 2001;Pisias et al. 2001), and sea levels falling as much as 150 m (Pielou 1991;Williams et al. 1998;Rahmstorf 2002 this community during...