Background: Polycomb proteins control transcription by regulating chromatin structure and dynamics. Results: By developing and applying a novel Sm-ChIPi technique, we identified that one PRC1 binds multiple nucleosomes within cells, although two PRC2s can bind a single nucleosome. Conclusion: PRC1 and PRC2 complexes employ distinct mechanisms to assemble on chromatin. Significance: The cellular assembly stoichiometry provides insight into repressive polycomb chromatin structure.