caudal (cad͞Cdx) genes are essential for the formation of posterior structures in Drosophila, Caenorhabditis elegans, and vertebrates. In contrast to Drosophila, the majority of arthropods generate their segments sequentially from a posteriorly located growth zone, a process known as short-germ development. caudal homologues are expressed in the growth zone of diverse short-germ arthropods, but until now their functional role in these animals had not been studied. Here, we use RNA interference to examine the function of caudal genes in two short-germ arthropods, the crustacean Artemia franciscana and the beetle Tribolium castaneum. We show that, in both species, caudal is required for the formation of most body segments. In animals with reduced levels of caudal expression, axis elongation stops, resulting in severe truncations that remove most trunk segments. We also show that caudal function is required for the early phases of segmentation and Hox gene expression. The observed phenotypes suggest that in arthropods caudal had an ancestral role in axis elongation and segmentation, and was required for the formation of most body segments. Similarities to the function of vertebrate Cdx genes in the presomitic mesoderm, from which somites are generated, indicate that this role may also predate the origin of the Bilateria.caudal͞Cdx genes ͉ short-germ development ͉ Artemia ͉ Tribolium ͉ evolution T he caudal (cad͞Cdx) genes are homeobox genes involved in posterior patterning in diverse species (1-11). In early Drosophila embryos Caudal protein is distributed in a posterior to anterior concentration gradient that is needed for the activation of segmentation genes and segment formation in posterior parts of the animal. caudal mutant embryos have severe segmentation problems affecting posterior segments; in the most severely affected mutants, most abdominal segments are missing (1). This function of caudal is characteristic of long-germ development, found in Drosophila, where all of the body segments are molecularly determined during the blastoderm stage. This mode is thought to be evolutionarily derived within the higher insects and does not represent the ancestral mode of development (12). On the contrary, short-germ development is found in diverse and phylogenetically basal groups of insects and other arthropods, suggesting that this represents the ancestral mode for generating segments within the arthropods. In short-germ arthropods (which we take to include intermediate-germ species), only the most anterior segments are laid down in the blastoderm (e.g., Fig. 1A), whereas more posterior segments are generated sequentially from a posteriorly located presegmental zone, usually referred to as the ''growth zone '' (12-14). caudal homologues have been cloned in some short-germ arthropods and found to be expressed consistently in this presegmental zone (15-22), but until now their function in these species had not been studied.To explore the functional role of caudal genes in the growth zone of short-germ arthropods, we ...