Immunoassays were developed to measure DNA damage retained by UV-irradiated whole bacterial cells. Active Mycobacterium parafortuitum and Serratia marcescens cells were fixed and incubated with cyclobutane pyrimidine dimer-binding antibodies after being exposed to known UV doses (254 nm). When both fluorescent (Alexa Fluor 488) and radiolabeled ( 125 I) secondary antibodies were used as reporters, indirect whole-cell assays were sensitive enough to measure intracellular UV photoproducts in M. parafortuitum and S. marcescens cells as well as photoenzymatic repair responses in S. marcescens cells. For the same UV dose, fluorescent DNA photoproduct detection limits in whole-cell assays (immunofluorescent microscopy) were similar to those in fluorescent assays performed on membrane-bound DNA extracts (immunoslot blot). With either fluorescent or radiolabeled reporters, the intracellular cyclobutane pyrimidine dimer content of UV-irradiated whole bacterial cells could be reliably quantified after undergoing a <0.5-order-of-magnitude decrease in culturability. Immunofluorescent microscopy results showed that photoenzymatic repair competence is not uniformly distributed among exponential-growth UV-irradiated pure cultures.The response of prokaryotes to UV radiation is important for understanding how UV influences population dynamics in natural systems (11,21) and the performance of engineered disinfection systems (10,27,30). UV performance in engineered systems has commonly been assessed on the basis of culturability changes using conventional enrichment techniques (7,16,19). While these assays provide a surrogate measure of the ability of UV radiation to render culturable bacteria nonculturable, only a small fraction of microorganisms in natural systems or engineered treatment systems are culturable (1). Additionally, conventional culturing assays cannot provide specific information regarding the types of DNA damage individual cells retain, the rate(s) at which DNA damage has been incurred, and the subsequent intracellular genetic repair (if any) that occurs in aquatic or aerosol environments.The literature cites the cyclobutane pyrimidine dimer (CPD), the 6-4 photoproducts, and the 5-thyminyl-5-dihydrothymine (spore photoproducts) as the most common type of UV-induced DNA damage observed in UV-irradiated prokaryotic cells (18,32,39). In bacteria, the detection and measurement of UV-induced DNA photoproducts has predominantly relied either on chromatographic separation techniques using radiolabeled DNA bases or on indirect assays. Both techniques require the extraction and purification of DNA. To measure DNA lesions by chromatography, 14 C or 3 H must be added to microbiological enrichments to produce organisms with radiolabeled thymine bases incorporated into their DNA. Following UV exposure, DNA is extracted from irradiated cells and hydrolyzed to cleave its phosphodiester bonds, which produces individual nucleotides and UV-associated dimers; UV photoproducts are typically quantified by high-performance liquid chrom...