Our previous studies revealed the species-based difference of CYP24A1-dependent vitamin D metabolism. Although human CYP24A1 catalyzes both C-23 and C-24 oxidation pathways, rat CYP24A1 shows almost no C-23 oxidation pathway. We tried to identify amino acid residues that cause the speciesbased difference by site-directed mutagenesis. In the putative substrate-binding regions, amino acid residue of rat CYP24A1 was converted to the corresponding residue of human CYP24A1. Among eight mutants examined, T416M and I500T showed C-23 oxidation pathway. In addition, the mutant I500Fshowed quite a different metabolism of 1␣,25-dihydroxyvitamin D 3 [1␣,25(OH) 2 D 3 ] from both human and rat CYP24A1. These results strongly suggest that the amino acid residues at positions 416 and 500 play a crucial role in substrate binding and greatly affect substrate orientation. A three-dimensional model of CYP24A1 indicated that the A-ring and triene part of 1␣,25(OH) 2 D 3 could be located close to amino acid residues at positions 416 and 500, respectively. Our findings provide useful information for the development of new vitamin D analogs for clinical use.The hormonally active form of vitamin D 3 , 1␣,25(OH) 2 D 3 , plays essential roles in calcium homeostasis, immune response, and cell differentiation (Boyle et al., 1971;Holick et al., 1971;Lawson et al., 1971;Norman et al., 1971;Bouillon et al., 1995). A large number of vitamin D analogs have been synthesized for clinical use in type I rickets, osteoporosis, renal osteodystrophy, psoriasis, leukemia, and breast cancer, and their biological activity has been evaluated. Much research has investigated the biological mechanism of vitamin D analogs, revealing that the biological activities of analogs are due not only to the analog itself but also to its metabolites (Binderup et al., 1991;Binderup, 1992;Dilorth et al., 1997). CYP24A1 plays a central role in the metabolism of 1␣,25(OH) 2 D 3 and its analogs in target tissues such as kidneys, intestines, and bones. A species-based difference has been revealed in the CYP24A1-dependent metabolism of 1␣,25(OH) 2 D 3 between rats and humans (Akiyoshi-Shibata et al., 1994;Beckman et al., 1996;Sakaki et al., 1999Sakaki et al., , 2000. Human CYP24A1 demonstrated a remarkable metabolism consisting of both C-23 and C-24 oxidation pathways, whereas rat CYP24A1 showed extreme predominance of C-24 over C-23 oxidation pathways. In addition, a remarkable species-based difference was also observed in the CYP24A1-dependent metabolism of vitamin D analogs Kusudo et al., 2003Kusudo et al., , 2004Abe et al., 2005). These facts suggest that preclinical tests using such animals as rats and mice cannot correctly predict the metabolism of vitamin D analogs in the human body. Thus, information on substrate recognition, the reaction mechanism, and the species-based difference of CYP24A1 seems quite useful to develop vitamin D analogs for clinical use. Another area of CYP24A1 research with pharmacological interest is development of specific inhibitor of CYP...