Heparan sulfate (HS)
is a cell surface polysaccharide recently
identified as a coreceptor with the ACE2 protein for the S1 spike
protein on SARS-CoV-2 virus, providing a tractable new therapeutic
target. Clinically used heparins demonstrate an inhibitory activity
but have an anticoagulant activity and are supply-limited, necessitating
alternative solutions. Here, we show that synthetic HS mimetic pixatimod
(PG545), a cancer drug candidate, binds and destabilizes the SARS-CoV-2
spike protein receptor binding domain and directly inhibits its binding
to ACE2, consistent with molecular modeling identification of multiple
molecular contacts and overlapping pixatimod and ACE2 binding sites.
Assays with multiple clinical isolates of SARS-CoV-2 virus show that
pixatimod potently inhibits the infection of monkey Vero E6 cells
and physiologically relevant human bronchial epithelial cells at safe
therapeutic concentrations. Pixatimod also retained broad potency
against variants of concern (VOC) including B.1.1.7 (Alpha), B.1.351
(Beta), B.1.617.2 (Delta), and B.1.1.529 (Omicron). Furthermore, in
a K18-hACE2 mouse model, pixatimod significantly reduced SARS-CoV-2
viral titers in the upper respiratory tract and virus-induced weight
loss. This demonstration of potent anti-SARS-CoV-2 activity tolerant
to emerging mutations establishes proof-of-concept for targeting the
HS–Spike protein–ACE2 axis with synthetic HS mimetics
and provides a strong rationale for clinical investigation of pixatimod
as a potential multimodal therapeutic for COVID-19.