2020
DOI: 10.1128/aac.02264-19
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Precision Medicine and Mysteries in Clinical Microbiology: Rationalizing Epidemiology, Genotype, and Phenotype To Guide Therapeutics

Abstract: Whole-genome sequencing (WGS) using MinION was used to characterize high-risk clones of Escherichia coli and Klebsiella pneumoniae harboring bla NDM-5 , bla OXA-181 , and bla CTX-M-15 , as well as Pseudomonas aeruginosa harboring bla NDM , in a patient who received health care in India. Synergy testing demonstrated the activity of aztreonam and ceftazime-avibactam in combination. This case illustrates a "precision medicine" approach where deeper understanding of the genotype through WGS and of the phenotype th… Show more

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Cited by 7 publications
(2 citation statements)
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“…A weighted distribution of drug susceptibility could also be incorporated based on recent local/regional surveillance data to guide the use of empiric therapy [ 67 ]. When actual PK (eg, drug exposure, penetration) and drug susceptibility patterns (eg, MIC, resistance genotypes) are known, these factors may pave the way toward precision dosing of antimicrobial therapy [ 68 , 69 ].…”
Section: Monte Carlo Simulations To Evaluate Dosing Strategiesmentioning
confidence: 99%
“…A weighted distribution of drug susceptibility could also be incorporated based on recent local/regional surveillance data to guide the use of empiric therapy [ 67 ]. When actual PK (eg, drug exposure, penetration) and drug susceptibility patterns (eg, MIC, resistance genotypes) are known, these factors may pave the way toward precision dosing of antimicrobial therapy [ 68 , 69 ].…”
Section: Monte Carlo Simulations To Evaluate Dosing Strategiesmentioning
confidence: 99%
“…This unfortunate combination of antimicrobial resistance, lack of clinical data and clinician experience, and the dearth of available effective treatment options presents a unique opportunity for collaboration between clinicians and researchers. These collaborations have been employed successfully, especially recently, against a variety of difficult-to-treat pathogens in complex clinical scenarios, highlighting the need for these types of partnerships to optimize therapy and achieve precision medicine [ 4 , 7 , 8 , 9 , 10 ]. Herein, we present a case of an immunocompromised stem cell transplant patient with persistent, extremely drug resistant VREf bacteremia and meningitis treated in collaboration between clinicians and scientists via the use of unique therapeutic drug monitoring and in vitro pharmacokinetic/pharmacodynamic (PK/PD) analyses.…”
Section: Introductionmentioning
confidence: 99%