Background
Immunosuppression is an important factor inducing infection which is a significant cause of death in severe burns. Nevertheless, the prognostic value of immune-related genes are still unclear. This study was conducted to find biomarkers related to immunosuppression in severe burns.
Methods
Here, we download the gene expression profile and clinical data of 185 burns and 75 healthy samples from GEO database. Immune infiltration analysis and gene set variation analysis were utilized to identify the disorder of circulating immune cells. WGCNA was carried out to select immune-related gene modules. Enrichment analysis and protein-protein interaction (PPI) network was performed to select hub genes. Next, lasso and logistic regression was utilized to construct the hazard regression model. Finally, we explored correlation between high and low risk patients in total burn surface area (TBSA), age, and inhalation injury.
Results
In Gene set variation analysis(GSVA) and immune infiltration analysis, neutrophil increased and T cell decreased in severe burns. In WGCNA, four modular that differently expressed in burns and controls were related with immune cells. Based on PPI and enrichment analysis, 210 immune-related genes were identified mainly involved in T cell inhibited and neutrophil activated. In lasso and logistic regression, we screened out key genes, LCK, SKAP1, GZMB and LY9. They are excellent biomarkers of prognosis in burns with AUC: 0.945. Finally, we discovered that key genes were related with T cells and regression model performed well accompanied by TBSA and age.
Conclusion
We found that LCK, SKAP1, GZMB and LY9 were excellent prognostic biomarkers which were likely function for T cell disorder in post-burn immunosuppression and were potential immunotherapeutic targets to convert T cell dysfunction.