It is well established that the expression of Bacillus thuringiensis (B.t.) toxin genes in higher plants is severely limited at the mRNA level, but the cause remains controversial. Elucidating whether mRNA accumulation is limited transcriptionally or posttranscriptionally could contribute to effective gene design as well as provide insights about endogenous plant gene-expression mechanisms. To resolve this controversy, we compared the expression of an A/Urich wild-type cryIA(c) gene and a G/C-rich synthetic cryIA(c) B.t.-toxin gene under the control of identical 5 and 3 flanking sequences. Transcriptional activities of the genes were equal as determined by nuclear run-on transcription assays. In contrast, mRNA half-life measurements demonstrated directly that the wildtype transcript was markedly less stable than that encoded by the synthetic gene. Sequences that limit mRNA accumulation were located at more than one site within the coding region, and some appeared to be recognized in Arabidopsis but not in tobacco (Nicotiana tabacum). These results support previous observations that some A/U-rich sequences can contribute to mRNA instability in plants. Our studies further indicate that some of these sequences may be differentially recognized in tobacco cells and Arabidopsis.Gene transfer into plants has become a relatively simple and routine process in many species. However, successful integration of a transgene into the plant genome does not automatically result in expression. For example, introduction of an additional copy of an endogenous gene can trigger cosuppression mechanisms, resulting in silencing of both the introduced and the endogenous genes (for review, see Meyer and Saedler, 1996). In the case of foreign genes transferred into plants, it is not uncommon to find that the introduced gene is incompatible with plant geneexpression mechanisms. Bacillus thuringiensis (B.t.)-toxin genes are perhaps the most widely known example of foreign genes for which it has been difficult to obtain useful levels of expression in transgenic plants (Diehn et al., 1996). Although a variety of mechanisms controlling gene expression have been blamed for poor B.t.-toxin expression, the exact cause remains controversial because of the limited amount of data gathered to address the problem. This is in part due to the inherent difficulties associated with studying a gene expressed at very low levels. It is also due to the fact that, for practical applications in agriculture, this problem can be circumvented by the brute-force approach of constructing highly modified synthetic versions of B.t.-toxin genes that yield high levels of expression. Nevertheless, elucidating the mechanisms that limit B.t.-toxin expression could make the design of new genes more efficient and provide insight about steps in gene expression that are relevant to endogenous plant genes.A widely observed characteristic of B.t.-toxin gene expression in plants has been that little or no mRNA accumulates, even when transcription is under the control of strong pr...