Congenital diaphragmatic hernia (CDH) is often detectable prenatally. Advances in genetic testing have made it possible to obtain a molecular diagnosis in many fetuses with CDH. Here, we review the aneuploidies, copy number variants (CNVs), and single genes that have been clearly associated with CDH. We suggest that array-based CNV analysis, with or without a chromosome analysis, is the optimal test for identifying chromosomal abnormalities and CNVs in fetuses with CDH. To identify causative sequence variants, whole exome sequencing (WES) is the most comprehensive strategy currently available. Whole genome sequencing (WGS) with CNV analysis has the potential to become the most efficient and effective means of identifying an underlying diagnosis but is not yet routinely available for prenatal diagnosis. We describe how to overcome and address the diagnostic and clinical uncertainty that may remain after genetic testing, and review how a molecular diagnosis may impact recurrence risk estimations, mortality rates, and the availability and outcomes of fetal therapy. We conclude that after the prenatal detection of CDH, patients should be counseled about the possible genetic causes of the CDH, and the genetic testing modalities available to them, in accordance with generally accepted guidelines for pretest counseling in the prenatal setting.
Key points What's already known about this topic?� Congenital diaphragmatic hernia (CDH) is a life-threatening birth defect that is often identified prenatally. A deeper understanding of the genetic causes of CDH, coupled with advances in genetic testing, have made it possible to obtain a molecular diagnosis in an increasing percentage of fetuses with CDH. Practitioners must be prepared to help individuals and families make informed decisions regarding genetic testing and to request the most appropriate genetic tests
What does this review add?� We provide a review of chromosomal abnormalities, copy number variants (CNVs), and genes that are clearly associated with the development of CDH in humans. We describe current genetic testing modalities so that practitioners can select the most appropriate genetic test(s). To aid practitioners, we also provide a review of topics that should be discussed with individuals and families so that they can make informed decisions regarding genetic testing